Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008798.1 Length=43265 Score E Sequences producing significant alignments: (Bits) Value seq371 141 3e-29 >seq371 Length=40469 Score = 141 bits (156), Expect = 3e-29 Identities = 300/450 (67%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 11738 ATATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAACGCTAAGAAAGTTGAGT 11793 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 11794 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 11849 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 11850 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAACTACAACCTAAATNNNNNNNNN 11907 | |||| || |||| | ||||| ||||| ||||||| | || Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 11908 NNNNNNNNNNNGGGAAGCAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 11967 || || ||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 11968 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 12027 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 12028 AAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCGC 12087 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||| | Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 12088 CTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTAAAA 12147 |||| ||||||||| |||| ||| | ||||| || || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 12148 GAAAAAGAGAAATGAAGTGATTTAATGCAA 12177 | || | || | || |||||| ||| || Sbjct 364 GCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 9050 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 9109 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 9110 ACCTAGCGCATTATGAAGCAGTCGGCAGAGGAATGAACAGAAACAAAATGAATCACTATG 9169 | ||||| |||||| ||||||| || | ||| |||||| ||| || | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 9170 GCAAACATGTATTAGCGTTATGTCGCGAACATCATAACCAGCAACATGCGATTGGCGTTA 9229 ||| | ||||||| ||||| | |||||||| ||||||| | || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 9230 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAAGCTC 9288 | | |||| | | | || ||||| || | | || ||| | | ||||| |||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 9289 AATAAAATGCTGAAAGGAGAGAAA 9312 || |||||||||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138319453334646