Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_008799.1 Length=43282 Score E Sequences producing significant alignments: (Bits) Value seq371 313 7e-81 >seq371 Length=40469 Score = 313 bits (346), Expect = 7e-81 Identities = 536/768 (70%), Gaps = 15/768 (2%) Strand=Plus/Minus Query 8611 ACAGAATAGACAGCAA---TCAAATAATCCATTTGCTAATGCTAATGGT---CCTATAGA 8664 ||| | || ||||||| || | ||||| ||| ||||||||| ||| || || || Sbjct 4193 ACAAACTAAACAGCAAGCGTCTGAGAATCCTTTTAATAATGCTAACGGTGGACCAATTGA 4134 Query 8665 AATCTCTGACGATGATTTACCTTTCTAGGACGTGATTAAATGGCTCAAATCAAAAACTAT 8724 || || || |||||||| ||||| | ||||||| ||||| ||| |||||||| Sbjct 4133 TATTCAAGATGACGATTTACCGTTCTAAGGTGTGATTATATGGCGGTAATAAAAAACTAC 4074 Query 8725 ATCACTCAAGATGACGGCACAACAACAGTCGTTATCGAGGGTGCCGAGCTAGGAGACAAA 8784 ||| ||| |||| ||||||| ||| | ||| || ||||||| || ||||| Sbjct 4073 ATCCAACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAA 4014 Query 8785 GAAACATTATTACTTGATAACGGCTACGAAGTCGAATGTGATTTGCGAATCGAAGACCCA 8844 || ||| ||||||||||||| | ||||| ||||| || | | ||| |||||| Sbjct 4013 GACTTTTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCA 3954 Query 8845 TTCAAAATAACAGACAAGCAACGAAGAAAAATATTTGCGCTCTGT-AACGACATAGAGAG 8903 | ||||||||| || |||||||| |||||| |||| || || ||| ||||| ||||| || Sbjct 3953 TACAAAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCT-TGTGAACGATATAGA-AG 3896 Query 8904 C-CACACAGGCCAACCACGTGACTATATGAGGTATTTGTTCCAAGAATATGTAACGGTTC 8962 | || |||||| |||| || ||||||||| || | ||||||||||||||| || | Sbjct 3895 CTCATACAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGC 3836 Query 8963 TGTATGACTATGACAAGAGTATTTCGTTAAGTGACTGTACACGGATGCAAGCGAATCAAA 9022 | || | ||| || || | || || | ||| ||| | ||| || | ||||| Sbjct 3835 TATACGGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAA 3776 Query 9023 TTATCGAGGTAACACTCGATTGGATATTTCACAACGACATACCGCTTAGTTATAAAACAA 9082 |||| || ||| || | || |||||||| | ||| |||| ||||| || |||||||||| Sbjct 3775 TTATAGATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAA 3716 Query 9083 GCGACTTGCTGAAACAAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTG 9142 | || | | || | || | | | || |||||| | | ||| | || | || || | Sbjct 3715 GTGATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCG 3656 Query 9143 TAATATGCGGAAAGCCTCACGCTGACCTAGCACATTATGAAGCAGTTGGCAGAGGCATGA 9202 | || || || ||| || || || |||||||||||| ||||||| || | || | Sbjct 3655 TTATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCA 3599 Query 9203 ACAGAAATAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCATA 9262 ||||| ||||| | || | | |||| | ||||||| ||||| | ||||||| Sbjct 3598 ACAGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATA 3539 Query 9263 ACGAGCAACATGCGATTGGCGTTAAGTCGTTT-AATGATAAATACCACTTGCATGACTCG 9321 | |||||||| | || ||| | | | |||| ||| | || || || || | | || Sbjct 3538 AAGAGCAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCA 3480 Query 9322 TGGATAAAAGTTGATGAGAGGCTCAATAAAATGCTGAAAGGAGAGAAA 9369 ||| | | ||||| ||||| || || |||||||||||||||| |||| Sbjct 3479 TGGGTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 158 bits (174), Expect = 3e-34 Identities = 278/411 (68%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 11820 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 11879 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 11880 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 11933 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 11934 GTATCGAAATACAACCGAAATNNNNNNNNNNNNNNNNNNNNNGGAAACAAAGACCGATTA 11993 ||||| |||||||||| || | |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 11994 CGTATATAGCTGATTTCTCTTTGTGGAAGGATGGCAAACTGGTCGAAGTTTTAGATGTTA 12053 ||||| || || || | | ||||| | | ||| || | ||||| |||| |||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 12054 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 12113 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 12114 ATGTGAATTTAACGTGGATATGTAAAGCACCTAAGTACACAGGCAAAACATGGATTACTT 12173 |||| || | || ||||||||||||||||||||||||||||| ||| ||| | || | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 12174 ACGAGGAATTAATTAAAGCAAGACGAGAACGCAAAAGAGAAATGAAGTGAT 12224 | || ||||| | || | ||||| |||||||| | || | || ||||| Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138373850602712