Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq16 132 4e-26 seq126 109 5e-19 seq148 107 2e-18 seq39 91.5 1e-13 >seq16 Length=31725842 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| | |||||| || | ||| | || || || ||||||||||||||||| Sbjct 21647024 ACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGA 21647083 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| |||||||| |||| || | || || || ||||| Sbjct 21647084 CAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| ||||| | ||| | ||||| | || ||| || Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || ||||||||||||||||||||||| Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq126 Length=6421402 Score = 109 bits (120), Expect = 5e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 114160 CACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG 114219 |||| |||||||| | | ||| | | || || ||||||||||||||||| || || Sbjct 2409816 CACGGAGTCTCAATGCAAGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGACAAAG 2409875 Query 114220 TACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279 |||| || ||| ||||| |||||||| |||| || | || || || |||||||| | Sbjct 2409876 TACGTCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTC 2409935 Query 114280 CTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCA 114339 |||| || || ||||| ||||| | ||| | ||||| | || ||| | || | Sbjct 2409936 CTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAA 2409995 Query 114340 CGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || || || || || |||||||| ||||||||||| Sbjct 2409996 GTGTGATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 2410038 >seq148 Length=4887613 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || || |||||||| | ||| || ||||||||| || || || Sbjct 4050576 GTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCT 4050635 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| ||| Sbjct 4050636 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTT 4050695 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| ||| || |||| ||| | || ||||| ||||| || Sbjct 4050696 ACATTCTCAATGGTATCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4050755 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 4050756 TTCACAAAGATCTGCAT 4050772 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || |||||||| || | ||| || ||||||||| ||||| || Sbjct 4050804 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCT 4050863 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 4050864 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTC 4050923 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || ||| ||| || || | ||| | || ||||| ||||| || Sbjct 4050924 ACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTC 4050983 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 4050984 TTCACGAAAATTTGCAT 4051000 >seq39 Length=21454635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||||||| || | ||| | || | || ||||||||||||||||| || |||||| Sbjct 17272296 AGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGT 17272237 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| ||||| |||||||| |||| || | || || || ||||||| ||||| Sbjct 17272236 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCC 17272177 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || ||||| ||||| | ||| ||||| || ||| || || | || Sbjct 17272176 TTATCCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTG 17272117 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | | | |||||||| ||||||||||| Sbjct 17272116 ATGGTCTTCTCCATAAAGGTTTTTACGAAAATCTGCAT 17272079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420112745879148