Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq26 168 1e-36 seq34 118 2e-21 seq136 96.9 7e-15 >seq26 Length=26652979 Score = 168 bits (186), Expect = 1e-36 Identities = 400/599 (67%), Gaps = 14/599 (2%) Strand=Plus/Minus Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||| || ||| || |||||| |||| ||||| |||| | || | |||| Sbjct 3408493 TTCTTTGCTGCCAGCGATGGCATACTCAACGAGAATCTGGTGGAGCGATTTAGCCAAGAA 3408434 Query 42489 GTGCAG--TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGC 42546 || ||| ||| || || ||||| ||||| |||||||| || ||||| || || | | Sbjct 3408433 GTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATATCC 3408376 Query 42547 ACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | ||||| ||||| | || || | |||| ||| | || || || | Sbjct 3408375 ATTCTGAAATGTAC---AGTCTCCTTATTGACACTTACGTTAAAGACTCCAAAGAAAGAG 3408319 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | ||||| | |||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 3408318 AGTTTCTGTTTACCACCATCGAGACCATGCCCTGCATGAAGAAGAAGGCGGACTGGGCCT 3408259 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 | |||| | | | || | || | || || | || | |||||| ||||| Sbjct 3408258 TGCGCTGGCTTGGGGACAAAGAGGTCACCTATGGAGAACGTGTGCTTGCCTTTGCCGCCA 3408199 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 | || || |||||||| || || | || || || ||||||| ||||||| | ||| Sbjct 3408198 TGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCGATCTTCTTGCTCAAGAAACAGGGAA 3408139 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || |||||||| || ||| ||| | ||||| |||||||| |||| | | Sbjct 3408138 TAATGCCTGGTCTCACCTTTTCCAACTGACTTACTAGCAGAGACGAGGGCTTGCACTGTG 3408079 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 ||||||||||||| ||||| | ||||| |||||| ||||| || || | || Sbjct 3408078 ACTTTGCCTGCCTGATGTTC---AAGCACCTTGTGCACAAACCCTCAGAGTAGAGAGTGA 3408022 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 || ||||| | | ||| | ||||||| ||||||||||||| || | |||| | Sbjct 3408021 AGGAGATCATTATCAATGCCTTCAGGATCGAGCAGGAGTTCCTCACCGAGGCCTTGCCTG 3407962 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 || || |||| |||||| | | | ||| |||||||| | | ||| || ||| Sbjct 3407961 TG-AGCTCATCGGGATGAACTGCAATTTAATGAAGCAGTACATCGAATTCGTGGCTGAC 3407904 >seq34 Length=23970518 Score = 118 bits (130), Expect = 2e-21 Identities = 110/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| ||||| | ||||| || || | ||||||||||| |||| || Sbjct 19377206 GGGGAGAGGGTGGTGGCCTTCGCGGCCGTGGAAGGAGTGTTCTTCTCGGGGTCCTTTGCG 19377147 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| || ||||| || ||||||||||| ||||| || Sbjct 19377146 GCCATCTTCTGGCTGAAGAAGAGAGGCCTC-ATGCCGGGCCTCACCTTCTCCAACGAGCT 19377088 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||||| ||||||| Sbjct 19377087 CATCAGCAGAGACGAGG 19377071 >seq136 Length=5168023 Score = 96.9 bits (106), Expect = 7e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | ||||| || || |||||||| || || | || || || ||||||| Sbjct 4986783 TGGTCGCCTTTGCTGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCAATCTTCT 4986724 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | | || | | ||||| || |||||||| || |||||||| || ||||| Sbjct 4986723 GGCTCAAG-AAACGGGGACTAATGCCTGGCCTCACCTTTTCCAACGAACTTATTAGCAGA 4986665 Query 42825 GACGAGG 42831 ||||||| Sbjct 4986664 GACGAGG 4986658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944289279869040