Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009526.1 Length=43864 Score E Sequences producing significant alignments: (Bits) Value seq371 358 2e-94 >seq371 Length=40469 Score = 358 bits (396), Expect = 2e-94 Identities = 546/770 (71%), Gaps = 12/770 (2%) Strand=Plus/Minus Query 6569 GCAAGAGAATTCGACGGACTAGACAAAACTGTTATTGATATGTCTAAGCACAAAGCAATC 6628 |||||||| || |||| |||| || ||||||||||| | |||| || || Sbjct 5236 GCAAGAGAGTTTAACGGTTTAGATGAAGTGACAATTGATATGTCATATCACATGGCGATT 5177 Query 6629 AAGAAAACAGTGACAGAAACTATTGAGTACGAGGAGGTAGAACATGACTGAACAAACATT 6688 || | ||| | |||| | | || |||||| |||| |||| |||| ||||||| Sbjct 5176 AAACATACACATATAGAAGAAGATAAATATGAGGAGTTAGATTATGAGTGAAAAAACATT 5117 Query 6689 ATTTGAACAGTTGAACAGTAAAAACGTGAATGATCATACAGAACaaaaaaaTGGAT-TAA 6747 |||||||||||| |||| | ||||| ||||||| ||| | || ||||| | ||| Sbjct 5116 ATTTGAACAGTTAAACACAATTAACGTATCTGATCATGTTGAAAAGAAGAATGGCTATAA 5057 Query 6748 CTTATCTAGCATGGTCATATGCACACCAAGAGCTGAAAAAGATTGACCCAAACTACACAG 6807 || || |||| ||| || ||||||| || | || ||||| ||||||| ||||| | Sbjct 5056 CT-ATTTAGCTTGGACACATGCACATGAACAACTTAAAAATGTTGACCCCAACTATGAAA 4998 Query 6808 TAAAAGTACACGAGTTTCCACATCCAGATATTAACACAGAA--AATTATTTTGTACCTTA 6865 |||| |||| ||||||||||| || ||||| | || | | || ||||| |||||||| Sbjct 4997 TAAAGATACATGAGTTTCCACACCCGGATAT-AGCAAATGACCAAGTATTT-GTACCTTA 4940 Query 6866 TTTGGCTACACCAGAAGGCTATTTTGTACAGGTATCTGTGACTGTGAAAGATAGTACAGA 6925 | | || || |||||||| ||||||||| | ||||| | | | |||| || ||| || Sbjct 4939 TCTAGCAACTCCAGAAGGTTATTTTGTAAAAGTATCAATCATATTAAAAGGTATTACCGA 4880 Query 6926 GACTGAGTGGCTTCCAGTATTGGACTTTAGAAATAAATCGCTTGCTAAAGGTAGTGCAAC 6985 | || ||| | |||||||| ||||||| ||| || ||| | || ||||| ||||| Sbjct 4879 ATCAGAATGGTTACCAGTATTAGACTTTAAAAACAAGTCGTTAGCGAAAGGGCAAGCAAC 4820 Query 6986 AACTTTCGATATTAACAAAGCGCAAAAACGATGTTTTGTTAAAGCTTCGGCTTTACACGG 7045 || |||||||| || ||||| |||||||| || ||||||||||| | || |||||||| Sbjct 4819 TACATTCGATATCAATAAAGCTCAAAAACGTTGCTTTGTTAAAGCAGCAGCATTACACGG 4760 Query 7046 TTTAGGCTTATATATCTACAACGGCGAGGAACTACCAAGTGCAAGTGACAACGATATTAC 7105 ||||| |||| ||||||||| | || ||| |||| | ||| ||| | ||| Sbjct 4759 CTTAGGTCTATACATCTACAACCGTGAAGAATTACCGAATGCTAGTAGTGAAGATGCACA 4700 Query 7106 AGAATTAGAAGAGCGTATCAATCAGTTCGTGAACTTATCTCAAGAAAAAGGGCGAGATGC 7165 ||| ||||||| || | | || || | | || ||||||||||| ||||||| Sbjct 4699 AGAGCTAGAAGATAAGATAGCTGAATTTGTACGCATTTCACAAGAAAAAGGCAGAGATGC 4640 Query 7166 AACTATCGATAAAACGATGAGATGGCTAAAAATATCTAACATTAATAAATTAAGTCAAAA 7225 ||| | || ||||| ||| | ||| || || || |||||||| |||||| || Sbjct 4639 AACATTGGAAAAAACAATGCGTTGGTTAGGCATTGAAAATATTAATAAGTTAAGTGGCAA 4580 Query 7226 ACAAATCGCAGAAGCACACCAAAAATTAGATGCAGGATTAAAACAATTGGATAGTGAGGA 7285 | | ||| |||| || |||| |||||||||||||||||||||| || | |||| Sbjct 4579 AGGCTTGGCAACAGCAAACGCAAAACTAGATGCAGGATTAAAACAATTAGACA---AGGA 4523 Query 7286 GAAACAATAATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGA 7335 ||| ||||||| ||| |||| | ||| ||||| | |||||||| Sbjct 4522 GAATGAATAATG---AATTTAACAATCTTAACGGGACGAATCACAAAAGA 4476 Score = 219 bits (242), Expect = 1e-52 Identities = 476/703 (68%), Gaps = 11/703 (2%) Strand=Plus/Minus Query 7703 GATGATGACTTACCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCAC 7762 ||||| || |||||||||| | || |||||| ||| | |||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 7763 TCAAGATGACGGTACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGTAATAAAGAAAC 7822 ||| |||| || |||| ||| | ||||| |||||| | | ||| ||||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTT 4009 Query 7823 ATTACTACTTGATAACGGGTTTGATGTGGAAGTCGATGTGAGC-GTCATAGATCCGTTTC 7881 ||||||||||||||||| || || || ||| | |||| ||| ||| | || || | Sbjct 4008 TTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGT-AGCAGTCGTTGACCCATACA 3950 Query 7882 GAATTACCGGCAAGCAACGACGAAAAATATTCGCGCTTGTCAAAGACATAGAAGAATATA 7941 ||| || | |||||||| ||||| ||||||| ||||| || || ||||||| ||| Sbjct 3949 AAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATA 3890 Query 7942 CAGGTCAACCAATGGACTATATGCGACATATGTTCATCGAGTATGTAAG-GACTTACTAC 8000 |||| ||| || |||||| | || | ||| || |||||| | | || ||| Sbjct 3889 CAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTA-TAC 3831 Query 8001 GGCTATGATGAACGTATTTCACTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATT 8060 ||||| ||||| || || ||||| | ||||| | || | | ||||||||||| || Sbjct 3830 GGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATA 3771 Query 8061 GAAGCAACGCTTGACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAAT 8120 || | | | |||| |||| ||| | || |||| || || || || ||||| ||| || Sbjct 3770 GATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGAT 3711 Query 8121 CTACTGAAACGAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATA 8180 ||| | || || | | | || |||||| | | ||| | || | || || || || Sbjct 3710 CTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATC 3651 Query 8181 TGCGGAAAGCCTCACGCTGACTTAGCACATTACGAAGCAGTAGGTAGAGGCATGAACAGA 8240 || || ||| || || || |||||||||| ||||||||||| | || |||||| Sbjct 3650 TGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGA 3594 Query 8241 AACAAGATGAATCACTACGACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAG 8300 |||||| | || | |||| | ||||||| ||||| | ||||| || ||| Sbjct 3593 CGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAG 3534 Query 8301 CAACATGCAATTGGTGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACTCGTGGAT 8359 ||||| | || || | | | |||| || | || ||||| || | | || ||| | Sbjct 3533 CAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGT 3475 Query 8360 AAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 8402 | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3474 GGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140236157074148