Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009799.3 Length=42972 Score E Sequences producing significant alignments: (Bits) Value seq372 351 3e-92 >seq372 Length=36520 Score = 351 bits (388), Expect = 3e-92 Identities = 758/1126 (67%), Gaps = 6/1126 (1%) Strand=Plus/Plus Query 15738 GGTCACGGTCGAGTGTAAATCCCTGTACCGATATATCGAGCGCTTGACGTGTCGAGCGGA 15797 |||| || |||| | || || || || || || ||||| | |||| || || || Sbjct 927 GGTCGCGATCGAATCGAAGTCGCTTTATCGCTACATCGAAAAAATCGCGTGCCGCGCCGA 986 Query 15798 TCCTAACATGCCCCTTATCGCGCA-TAAAGCTACCGTGACTTTAGAGCCGGGGACTCGCT 15856 || ||| || || ||||| || | | ||||| ||||| | ||||| |||||||| Sbjct 987 CCCCAACGCACCACTAATCGCACAATTGCGTTACCGCGACTTCCGCGCCGGCGACTCGCT 1046 Query 15857 GCGCGTTATCAAGGAATACATGCTTGTTAACCTCATGCGCGAGTTCCAACCCAACGGTAT 15916 ||||| || ||||||||| | | || |||||||||||||| |||||||| || | Sbjct 1047 TCGCGTCATGAAGGAATACCTATTGGTGAACCTCATGCGCGACTTCCAACCGCGCGCGGT 1106 Query 15917 CAAAGGCTGGAACATGTGGAACGCCTCGAGCTGGGCGAGCGTAAATCAAACGCTTTGGCC 15976 || |||||| | |||||| || |||| ||| | | || || | |||||||| Sbjct 1107 CACCGGCTGGGATATGTGGTCGGCGTCGAATTGGTCACGGGTCAACCCGGATCTTTGGCC 1166 Query 15977 CGCTATGGTGTGTCCGTTC-ACGATACGACTACCTCAGTCGCTACCGTACTCGACGCGCG 16035 || || || ||| || || | | || || | || || || || ||||| || Sbjct 1167 GGCAATCGTCAACCCGATCCACCAATCCACCACGACGGTTCACACGGTGCTAGACGCCCG 1226 Query 16036 GTTCGACGCTGCAGCGAGCTTGTTTGCAAGCACACTTGACGCTGCGGGGCTCATGCTCAC 16095 |||||| || || | || || || || | ||| || ||||||||||| || Sbjct 1227 CTTCGACCACGCGTCGGAACTCTTCGCCGATACTCTCGGCGCGGCCGGGCTCATGCTGAC 1286 Query 16096 CGT-GACCTTGTGGCTCGAGGGGGACACACAACCCGCCCCGCTGCATGTCACCTTAGCCA 16154 || || || |||||| || || ||| | || ||| ||| |||||| || || | Sbjct 1287 TGTCGATCT-GTGGCTGGAAGGCGACCCGCAGCCCTTCCCCTCGCATGTGACGCTACGTA 1345 Query 16155 AGCCTACTATCTGGATTGACGTACGATCACGACAATTCGACACGTCCACAACGGGCGGGT 16214 | || || || ||| ||| | | || ||||||||||| || || || ||| Sbjct 1346 AACCCACCTTCGTGATCGACATTGTGCCGCGCCAATTCGACACCTCAACCACTGGCACCG 1405 Query 16215 TCATGGATATTTTGCACGGCCTTGTGCGCACGTTCGATACGGAAAATAACGTACCGCGCG 16274 | || | | | || || |||||||| ||||| |||||| |||| ||| | Sbjct 1406 CGCTAGACCTACTCCGTGGACTGGTGCGCACCTTCGACCGGGAAAACAACGCGCCGACCA 1465 Query 16275 TGGGACTAGGCGACACCCCGGCAACATGGGCAGACCGTCTACCGTGGGTAGTGTGGCGAC 16334 | || || |||||||||||||| || || | ||| || || ||||| || ||||||| Sbjct 1466 TCGGTCTCGGCGACACCCCGGCGACCGCCGCCGGCCGACTCCCATGGGTCGTATGGCGAC 1525 Query 16335 CTAGCTCTATGGCCGGGTCGTCTCTCGATCTTACGGTAGTCAAGTCCGAAGATTCTCACG 16394 | ||||| ||| || |||| | || || || |||||||| || | |||| Sbjct 1526 CAGAAGATATGGGCGGTATTTCCTCCGATTTCACCGTCGTAAAGTCCGAGGACTGGCACG 1585 Query 16395 TCACCGTAGGCGGGCGATCCCCTGAGGTACTTAACAAACTTATCGGCGCGGGCTCTAAGT 16454 |||||| |||||||| || || || || ||||||| || |||||||||||||| |||| Sbjct 1586 CCACCGTGGGCGGGCGGTCGCCGGAAGTCATTAACAAGCTGATCGGCGCGGGCTCGAAGT 1645 Query 16455 CCCTCTTCCAAGGACTCGCTGCAGCGCTCGCAGCTAAGATACCTC-AGTTCGCCCCGCTT 16513 | |||||||||| |||| || ||||| || || |||| | |||| |||||| Sbjct 1646 CGATCTTCCAAGGTATCGCCGCCGCGCTGGCTGC-CGCTTACCCCGCCTTCGGGCCGCTT 1704 Query 16514 ATCGTGGCAGCCGGTGTATTCCTCGGTGACCTATCCGGTCAAGCTCTACAAGACAAGCTA 16573 ||||| || ||||| | |||||||| ||| | |||| | | |||||||| || Sbjct 1705 ATCGTCGCCGCCGGCGCGTTCCTCGGCGACGTTATCGGTTCGTCCATGCAAGACAAACTT 1764 Query 16574 TTCGCATGGAACGAGTTTGAGGACGCGGTACGACGAGAAGCACACGGATTCTACCGCTAC 16633 | || ||| | || ||| |||||||||| || ||||||||||| | | ||| Sbjct 1765 ATGGCGTGGCAAGAATTTAGCCACGCGGTACGCCGCGAAGCACACGGCCGGTTCGCATAC 1824 Query 16634 CGCGACGTAGTAGGCAACGGCGACGGCTGGACACTAAGCGCATGGCAGCAAGGTTTCCAG 16693 |||||| ||| ||| ||||||||||||||| || || ||||| ||||||||| | Sbjct 1825 CGCGACCAAGTCGGCGCCGGCGACGGCTGGACCCTCTCGGCGTGGCAACAAGGTTTCTCG 1884 Query 16694 ATGCTCAAAGAGGGCGCGGGCATGATCTCAGGCTCATTCACAGGCGGGGAGAACCTCGCC 16753 ||||| || | ||||| ||||||||||| | |||| | | || | | Sbjct 1885 ATGCTGCAACAAGGCGCCGGCATGATCTCGGTTGGTTTCAACGTTGATGATCAATCCATT 1944 Query 16754 TACAAGTGGGGTCGAGACTTCCGCGCCGGGGATCAACAAGGTTTTGTCTATAAGAACGTC 16813 ||| ||||||||| |||| ||||||||| || || || || | || | ||| Sbjct 1945 TACCGGTGGGGTCGTGACTACCGCGCCGGCGACCAGCAGGGCCTGGTACACCGCGGCGTG 2004 Query 16814 GTGTTCTCTACGTTCGTGTCCGAGGTGACGCTCACGTGGACGGTCG 16859 ||||| |||| | || | || ||||| ||||||| |||||| Sbjct 2005 GTGTTTGCTACTTATGTCGCTGAAACGACGCGCACGTGGTCGGTCG 2050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137381900420332