Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009812.1 Length=42653 Score E Sequences producing significant alignments: (Bits) Value seq371 134 4e-27 >seq371 Length=40469 Score = 134 bits (148), Expect = 4e-27 Identities = 230/333 (69%), Gaps = 3/333 (1%) Strand=Plus/Minus Query 12126 AAAGGTGCTTCGGCGTGGTCTAGTGTTATTAAGAAAGCTGCTCTAGCCATGAAAGTGGAT 12185 |||| |||||| ||| || ||| ||||| ||| ||| | |||||||| | Sbjct 27390 AAAGCTGCTTCTAAATGGGCTCGTGACATTAAACGAGCAGCTAAACAGATGAAAGTCAAC 27331 Query 12186 TTGTCCGGTGGTGAATTAAAAGGGATTATAGCACAAATTCATCGTGAATCTGGCGGGAAT 12245 || || | |||| |||||||| ||||| ||||| ||||| ||||||||| || ||| Sbjct 27330 TTATCGAATAGTGAGTTAAAAGGTATTATTGCACAGATTCAACGTGAATCTAATGGTAAT 27271 Query 12246 GAAAAAATAACTCAGTCATCTGCTGTTGTGGATGTTAATACACTATCAGGTAATCCAGCT 12305 | ||||||| | | ||| ||| | |||| | ||||| |||||| Sbjct 27270 GCTGGTGTAACTCAAGGAAATA---TTGGCGATATAAATAACTTGAGAGGTACTCCAGCA 27214 Query 12306 AAAGGATTGCTTCAATATATCCCACAAACATTTAATGCGTATAGAATGAAAGGGCATAAC 12365 ||||||| || |||||| | ||| || || || | ||| | ||||||||||| Sbjct 27213 CAAGGATTACTACAATATGTACCAAGTACTTTCAAATCATATGCTGTTAAAGGGCATAAA 27154 Query 12366 AATATATTTTCTGGTTATGACCAGTTACTAGCTTTCTTCAACAACTCATCGTGGAGAAAC 12425 ||||| |||||||| || ||||| |||||||| |||||||| |||||| Sbjct 27153 AATATTAAAAACGGTTATGATCAATTACTTGCTTTCTTTAACAACTCTAACTGGAGACGT 27094 Query 12426 GATTTACCTTATGGTAAACGAGGTTGGGGACCA 12458 |||||||| |||||||| | |||||||||||| Sbjct 27093 GATTTACCATATGGTAAGAGCGGTTGGGGACCA 27061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136361151684270