Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq148 140 8e-28 seq16 134 3e-26 seq126 116 9e-21 seq39 116 9e-21 seq40 113 1e-19 seq117 109 1e-18 seq22 84.2 5e-11 seq12 84.2 5e-11 >seq148 Length=4887613 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | ||||| ||||| ||| Sbjct 4050810 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAG 4050869 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 4050870 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 4050929 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| ||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 4050930 TCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 4050989 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 4050990 AAAATTTGCATTTTG 4051004 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| || || | || ||||| || ||||| | || || ||||| ||| Sbjct 4050582 TCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAG 4050641 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| ||||||||||||||||| || || || || || Sbjct 4050642 ATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTC 4050701 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| ||||| || ||||| ||||| || ||||| ||||| || Sbjct 4050702 TCAATGGTATCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 4050761 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 4050762 AAGATCTGCATT 4050773 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 4050354 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAG 4050413 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || ||||| || Sbjct 4050414 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTC 4050473 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 4050474 TCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 4050533 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4050534 AAGATCTGCAT 4050544 >seq16 Length=31725842 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| |||| ||| | || ||||||| ||| || ||||| || || || || | Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || |||||||||| || | ||| || Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| || ||||| || || || |||||||| Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq126 Length=6421402 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||| | |||||||| | | | ||||||| || || ||||| || || || || | Sbjct 2409812 CCAGCACGGAGTCTCAATGCAAGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGAC 2409871 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| | ||| | ||| || || || |||||||| | || ||| | || Sbjct 2409872 AAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGA 2409931 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || |||||||||| || | ||| | Sbjct 2409932 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCC 2409991 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| || || || || ||||| |||||||| Sbjct 2409992 TCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 2410038 >seq39 Length=21454635 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||| | ||||||| | || ||||||| ||| || ||||| || || || || | Sbjct 17272305 CCACTGAGGAGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGAC 17272246 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 17272245 AAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGA 17272186 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || ||||| || |||||| | | || | ||| || Sbjct 17272185 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACC 17272126 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||| | | | || || ||||| |||||||| Sbjct 17272125 TCGAGCGTGATGGTCTTCTCCATAAAGGTTTTTACGAAAATCTGCAT 17272079 >seq40 Length=22651954 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || ||||| | ||| || || || || || | ||||| || || || |||||| Sbjct 7366524 TGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGA 7366583 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 ||||| || | ||||| || || || || |||||||| ||||| || || || || Sbjct 7366584 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATG 7366643 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || || | || || ||||| ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 7366644 GTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATC 7366703 Query 288469 TGCAT 288473 ||||| Sbjct 7366704 TGCAT 7366708 >seq117 Length=6347111 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | || ||| | || ||||| | || || |||| ||| Sbjct 1554172 TCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCTGTAAAG 1554113 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || || || || Sbjct 1554112 ATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTC 1554053 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || | ||| ||||| || ||||| ||||| || ||||| ||||| | | Sbjct 1554052 TCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCATG 1553993 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 1553992 AAGATTTGCATTTTG 1553978 >seq22 Length=29172479 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| | ||| || ||||| | ||| | | || || || | ||||| | || || Sbjct 11894381 TCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCCTCCAGCTGTTTGTCGGCAAAT 11894440 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| || || || || |||||||| ||||| || || Sbjct 11894441 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 11894500 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | | | || || | || || ||||| ||||| | ||| || ||||| ||||| | | Sbjct 11894501 TTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCCTTGCCCGTCAGGGTCTTCAGG 11894560 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 11894561 AAGATCTGCAT 11894571 >seq12 Length=34595640 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||| || ||||| | ||| || | || || || | ||| | || || || Sbjct 22518559 TCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCATCCTCCAGCTGTCTGCCGGCAAAT 22518500 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | ||||| || || || || |||||||| ||| | || || Sbjct 22518499 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTCTGACATTC 22518440 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 | || | || || || || ||||| ||||| ||||| || ||||| || | ||| Sbjct 22518439 TTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGATCCTCACG 22518380 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 22518379 AAGATCTGCAT 22518369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179590481532262