Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_010147.1 Length=43011 Score E Sequences producing significant alignments: (Bits) Value seq371 522 7e-144 >seq371 Length=40469 Score = 522 bits (578), Expect = 7e-144 Identities = 857/1235 (69%), Gaps = 13/1235 (1%) Strand=Plus/Minus Query 9747 CAATTTGAAATTGAAAGCACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 9806 |||| |||||||||||| || | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 9807 AAGATAAGAGTTAAAGATTACATGTTTACTAACGAAAAGTTTAAAACCTTTTTCAATTAT 9866 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 9867 GTAATGGATGCCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 9926 | | ||| |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 9927 GAATTTTTAGATGCAGATACTATAACTAAACTTTATAACTCCGATTTCATTGGATACGGA 9986 ||| ||| | ||| || |||||| | |||||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 9987 TTCTTTGAACGTTATCAACAAGANNNNNNNNNNNNNNNNNNAATCAACAAAGCGAAAGAA 10046 |||||||| | ||||||||||| ||| | |||||||| ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 10047 -TTGGTAACTGAGTTCAAACAACAACCTACGAACC--AAAATTTTAATAACTTGATTGAT 10103 || | | | | || |||||| | |||| ||| ||| ||||||| | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC--ACCTGAAACTTTTAATGAAATGGTTGAG 2013 Query 10104 GAACTCAAGGATTTAAAAACAATTACTAACAGAAAAGAAGACGGAAC-CAAGAAGTTTGT 10162 |||| || || |||| | || || | || |||||| || || || ||| | | || Sbjct 2012 AAACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGC 1954 Query 10163 TGANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTA 10222 | | ||| || ||| ||| | | | | || || || Sbjct 1953 TAAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATA 1894 Query 10223 CAAGCTCATGGATTACAAAATAGGGGGATTGGAGCCGTCGCAATTAATCGTCATCGCAGC 10282 || |||||||| || ||||| || || || ||||| ||||| || || || || || Sbjct 1893 TAAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGC 1834 Query 10283 GCGTCCCTCAGTGGGTAAGACAGGCTTTGCATTAAACATGATGCTGAACATAGCACAAAA 10342 ||||| || |||||||| || ||||||||||| |||||| |||||| ||| || | Sbjct 1833 TCGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACA 1774 Query 10343 TGGATACAAAACATCTTTCTTTAGTCTCGAAACAACCGGCACATCGGTGTTGAAACGTAT 10402 || || ||||||| ||||||||| | |||||||| || | | | || || | | Sbjct 1773 AGGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATT 1714 Query 10403 GTTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGC 10461 | |||| || || |||||||| ||||||| || ||| | | || || || | ||| Sbjct 1713 GCTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGC 1655 Query 10462 CGGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATA 10521 | |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | | Sbjct 1654 CAAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACA 1595 Query 10522 TTTCTGATAAAAGTAATATCACACCGCAAGACGTGCGAGCACAAGCAATGAGGCATTCAG 10581 || ||| | || | | ||||| |||||| | |||||||||| |||| |||| | Sbjct 1594 TTAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTG 1535 Query 10582 ACGGTCAACAAGTTATTTTTATAGATTACCTTCAACTGATGGATACTGATGCGAAAGTTG 10641 || | ||||||||| ||||| |||||||||||| | ||||| || ||| | || |||| Sbjct 1534 ACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTG 1475 Query 10642 ATAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACGG 10701 ||||||| || ||||| |||||||||||||| ||||| || || || || || || || | Sbjct 1474 ATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAG 1415 Query 10702 GCGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGACAGGATAAAA 10761 | ||||| || ||| | ||||| ||| |||||||||| || || || ||| | |||||| Sbjct 1414 GAGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAAC 1355 Query 10762 GACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCAA 10821 | || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | || | Sbjct 1354 GTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGA 1295 Query 10822 TGCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACAGGCAAAT 10881 || | | || | |||||||| || | | || |||| || | || | || |||| Sbjct 1294 TGATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAAT 1238 Query 10882 CTATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACTGGAATAATTGAATTTG 10941 |||| ||||||||||| |||||||| |||||||| || |||||||| | |||||||||| Sbjct 1237 CTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTG 1178 Query 10942 AGTATTACAAGAAGACGCAGAGGTTTTTCACATGA 10976 | | ||||||||| || |||||||||||||||||| Sbjct 1177 AATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 159 bits (176), Expect = 1e-34 Identities = 349/513 (68%), Gaps = 15/513 (3%) Strand=Plus/Minus Query 8110 CAACGTAAATTGATATTCGCA-TTGTGTAACGATATAGAAGCTCATACAGGACAGCCTCG 8168 ||||||| | ||||||| ||||| ||||||||||||||||||||||| ||| | Sbjct 3935 CAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCTCATACAGGCACGCCACA 3877 Query 8169 AGATTATATGAGACAAATGTTCCAAGATTATGTGAAGTTT-CTGTATGGCTATGAAGAAC 8227 |||||||||||| | | |||||||| ||||| | || | || || ||||| || || | Sbjct 3876 AGATTATATGAGGAATGTATTCCAAGAATATGT-ACGTGTGCTATACGGCTACGATGAGC 3818 Query 8228 GCATATCTTTATCAAATTGTTCTCGAACTATAGCCAAGCAAATTATAGA---AGCGATGT 8284 ||||||| | | |||||||| | | | || | ||||||||||| ||| | Sbjct 3817 GCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGCAA--- 3761 Query 8285 TTGAGTGGATTTTTACAAATGCGATTCCATTAAATTATAAAACAAGCAAATTGATGAAAG 8344 |||| ||||| || || || || | | ||||||||||| | | || || Sbjct 3760 TTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAAGA 3701 Query 8345 AAGATAAAAATTATCTTTATTGGGCAACTGTTACGCGTCATTGCATTATATGCGGAAAGC 8404 | || | || | | | || ||| ||| | | | | | ||| |||| || || ||| Sbjct 3700 ATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAG- 3642 Query 8405 CTCACGCTGACCTAGCACATTATGAAGCAATCGGTAGAGGTATGAACAGAAAGAAGATGA 8464 || || || |||||||||||| ||||| | ||| | || |||||| ||||| Sbjct 3641 --CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAG 3584 Query 8465 ATCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCATAACGAGCAACATGCGA 8524 | || | | |||| | ||||||| ||||| | |||||||| |||||||| | | Sbjct 3583 AACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACA 3524 Query 8525 TTGGTGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGAT 8583 | || | | | |||| || | || ||||| || | | || ||| | | ||||| Sbjct 3523 TGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGAC 3465 Query 8584 GAGAGGCTCAATAAAATGCTGAAAGGAGAGAAA 8616 ||||| || || |||||||||||||||| |||| Sbjct 3464 GAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137506694152954