Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq148 156 4e-33 seq117 136 4e-27 seq16 114 1e-20 seq40 111 2e-19 seq39 98.7 1e-15 seq126 93.3 4e-14 seq22 86.0 6e-12 seq12 84.2 2e-11 >seq148 Length=4887613 Score = 156 bits (172), Expect = 4e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || |||||||| || | | ||||| | || Sbjct 4050788 AAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATC 4050847 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||| ||||| ||| | ||||||| ||||||||| ||||| || |||||||| || Sbjct 4050848 TTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 4050907 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | ||||||| || |||||||||| || | ||| Sbjct 4050908 CTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGT 4050967 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| |||| || || ||||||||||||||||| Sbjct 4050968 CTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 Score = 145 bits (160), Expect = 8e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || || |||||||| | | ||||| | ||||||||||||||||| Sbjct 4050576 GTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCT 4050635 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||||||||| || |||||||| || || || || |||| Sbjct 4050636 GCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTT 4050695 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| || |||||||| | || | ||||||||| |||| || Sbjct 4050696 ACATTCTCAATGGTATCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 4050755 Query 64427 TTTACGAAAATTTGCATT 64444 || || || || |||||| Sbjct 4050756 TTCACAAAGATCTGCATT 4050773 >seq117 Length=6347111 Score = 136 bits (150), Expect = 4e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | ||| | | ||||| ||||||||||| Sbjct 1554178 GTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCT 1554119 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 | | | ||||||| ||| ||||| ||||| || |||||||| || || || || |||| Sbjct 1554118 GTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTT 1554059 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| || |||||||| | ||| | ||||||||| |||| || Sbjct 1554058 ACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 1553999 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | ||| ||||||||||| Sbjct 1553998 TTCATGAAGATTTGCATTTT 1553979 >seq16 Length=31725842 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| | ||| ||||||| || || || ||||||||||||||||| | Sbjct 21647024 ACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGA 21647083 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || ||||| || ||| | || |||| ||||| || ||||| Sbjct 21647084 CAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || || || || |||||| || | || || || || || Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || || | ||||||||| ||||| ||||| || Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq40 Length=22651954 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | ||||||||| || | || || ||| | |||||||| || | | Sbjct 7366486 CCACCTCGCAGGCGAAGCACTAGGTGCAGGGTAGACTCT----GGATGTTGTAGTCAGAG 7366541 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||| ||||||||| | || || ||||||||||| || || Sbjct 7366542 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 7366601 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||||| ||| ||| | || |||| || ||||| Sbjct 7366602 ATGCCCTCCTTGTCTTGGA-TTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 7366660 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 7366661 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq39 Length=21454635 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || | || ||||||||||||||||| | | || || | Sbjct 17272294 TCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCC 17272235 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || ||||| || ||| | || |||| ||||| || ||||||||||||| || Sbjct 17272234 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTT 17272175 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || |||||| || ||| || || || || || | || | Sbjct 17272174 ATCCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGAT 17272115 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| | | || |||||||||||||| ||||| || Sbjct 17272114 GGTCTTCTCCATAAAGGTTTTTACGAAAATCTGCATCTT 17272076 >seq126 Length=6421402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 ||||||| | || || ||||||||||||||||| | | || || | | ||| || Sbjct 2409833 AGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGT 2409892 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| | || |||| ||||| || |||||||||||||| || || || || Sbjct 2409893 TGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 2409952 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || |||||| || | || || || || | || | || | |||||| || Sbjct 2409953 TTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCT 2410012 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | |||||||||||||| ||||| || Sbjct 2410013 GTAAGGGTTTTTACGAAAATCTGCATCTT 2410041 >seq22 Length=29172479 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGAC-GGTGCGCGCGT 64289 |||||| || || | || || ||||| | |||||||| || | || ||| || | | Sbjct 11894359 AAGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGC-CAT 11894417 Query 64290 CTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTT 64349 | || ||||| ||| ||||| | || || ||||||||||| || || || || || || | Sbjct 11894418 CCTCCAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGT 11894477 Query 64350 CTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 |||| | |||| ||||| ||| || || |||| || ||||| || | || | | Sbjct 11894478 CTTGGA-TTTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATG 11894536 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||| |||| || || | ||| || ||||| Sbjct 11894537 GCCTTGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq12 Length=34595640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| | || |||||| || | || || ||||| || | |||||| || | | Sbjct 22518595 CCACCTCGCAGGCGAAACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAG 22518536 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | || || ||||| |||||||| | || || ||||||||||| || || Sbjct 22518535 AGAGTTTGGCCATCCTCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 22518476 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCT-TTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| | |||| ||| | ||| || | || |||| | ||||| Sbjct 22518475 ATGCCCTCCTTGTCTTGGA-TTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCAC 22518417 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| | | ||||| || ||||| Sbjct 22518416 CTCGAGGGTGATGGTCTTGCCCGTCAGGATCCTCACGAAGATCTGCAT 22518369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499618387526760