Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_010808.1 Length=44342 Score E Sequences producing significant alignments: (Bits) Value seq371 367 4e-97 >seq371 Length=40469 Score = 367 bits (406), Expect = 4e-97 Identities = 557/785 (71%), Gaps = 12/785 (2%) Strand=Plus/Minus Query 6640 TAGAGCTAGGGAATTTAACGGTATGGAAGAAGCGAGTATCAATATGGATTATCACAAAGC 6699 |||||| || || ||||||||| | || |||| || || ||||| ||||||| || Sbjct 5240 TAGAGCAAGAGAGTTTAACGGTTTAGATGAAGTGACAATTGATATGTCATATCACATGGC 5181 Query 6700 AATCAAGAAAACAGTGACAGAAACTATTGAGTACGAGGAGGTAGAACATGACTGAACAAA 6759 || || | ||| | |||| | | || |||||| |||| |||| |||| ||| Sbjct 5180 GATTAAACATACACATATAGAAGAAGATAAATATGAGGAGTTAGATTATGAGTGAAAAAA 5121 Query 6760 CATTATTTGAACAGTTGAACAGTAAAAACGTGAATGATCATACAGAACaaaaaaaTGGAT 6819 |||||||||||||||| |||| | ||||| ||||||| ||| | || ||||| | Sbjct 5120 CATTATTTGAACAGTTAAACACAATTAACGTATCTGATCATGTTGAAAAGAAGAATGGCT 5061 Query 6820 -TAACTTATCTAGCATGGTCATATGCACACCAAGAGCTGAAAAAGATTGACCCAAACTAC 6878 ||||| || |||| ||| || ||||||| || | || ||||| ||||||| ||||| Sbjct 5060 ATAACT-ATTTAGCTTGGACACATGCACATGAACAACTTAAAAATGTTGACCCCAACTAT 5002 Query 6879 ACAGTAAAAGTACACGAGTTTCCACATCCAGATATTAACACAGAA--AATTATTTTGTAC 6936 | |||| |||| ||||||||||| || ||||| | || | | || ||||| |||| Sbjct 5001 GAAATAAAGATACATGAGTTTCCACACCCGGATAT-AGCAAATGACCAAGTATTT-GTAC 4944 Query 6937 CTTATTTGGCTACACCAGAAGGCTATTTTGTACAGGTATCTGTGACTGTGAAAGATAGTA 6996 ||||| | || || |||||||| ||||||||| | ||||| | | | |||| || || Sbjct 4943 CTTATCTAGCAACTCCAGAAGGTTATTTTGTAAAAGTATCAATCATATTAAAAGGTATTA 4884 Query 6997 CAGAGACTGAGTGGCTTCCAGTATTGGACTTTAGAAATAAATCGCTTGCTAAAGGTAGTG 7056 | || | || ||| | |||||||| ||||||| ||| || ||| | || ||||| | Sbjct 4883 CCGAATCAGAATGGTTACCAGTATTAGACTTTAAAAACAAGTCGTTAGCGAAAGGGCAAG 4824 Query 7057 CAACAACTTTCGATATTAACAAAGCGCAAAAACGATGTTTTGTTAAAGCTTCGGCTTTAC 7116 |||| || |||||||| || ||||| |||||||| || ||||||||||| | || |||| Sbjct 4823 CAACTACATTCGATATCAATAAAGCTCAAAAACGTTGCTTTGTTAAAGCAGCAGCATTAC 4764 Query 7117 ACGGTTTAGGCTTATATATCTACAACGGCGAGGAACTACCAAGTGCAAGTGACAACGATA 7176 |||| ||||| |||| ||||||||| | || ||| |||| | ||| ||| | ||| Sbjct 4763 ACGGCTTAGGTCTATACATCTACAACCGTGAAGAATTACCGAATGCTAGTAGTGAAGATG 4704 Query 7177 TTACAGAATTAGAAGAGCGTATCAATCAGTTCGTGAACTTATCTCAAGAAAAAGGGCGAG 7236 ||| ||||||| || | | || || | | || ||||||||||| ||| Sbjct 4703 CACAAGAGCTAGAAGATAAGATAGCTGAATTTGTACGCATTTCACAAGAAAAAGGCAGAG 4644 Query 7237 ATGCAACTATCGATAAAACGATGAGATGGCTAAAAATATCTAACATTAATAAATTAAGTC 7296 ||||||| | || ||||| ||| | ||| || || || |||||||| |||||| Sbjct 4643 ATGCAACATTGGAAAAAACAATGCGTTGGTTAGGCATTGAAAATATTAATAAGTTAAGTG 4584 Query 7297 AAAAACAAATCGCAGAAGCACACCAAAAATTAGATGCGGGATTAAAACAATTGGATAGTG 7356 ||| | ||| |||| || |||| ||||||| |||||||||||||| || | Sbjct 4583 GCAAAGGCTTGGCAACAGCAAACGCAAAACTAGATGCAGGATTAAAACAATTAGACA--- 4527 Query 7357 AGGAGAAACAATAATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGA 7416 ||||||| ||||||| || | || | ||| ||||| | ||||||||| ||| Sbjct 4526 AGGAGAATGAATAATG---AATTTAACAATCTTAACGGGACGAATCACAAAAGACTTAGA 4470 Query 7417 ATTAA 7421 | ||| Sbjct 4469 ACTAA 4465 Score = 212 bits (234), Expect = 2e-50 Identities = 481/710 (68%), Gaps = 25/710 (4%) Strand=Plus/Minus Query 7778 GATGATGACTTACCGTTCTGATTGGAATGATTAAATGCCGAAAATTACTAGTTATATCAC 7837 ||||| || |||||||||| | || |||||| ||| || ||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 7838 TCAAGACGACGGCACAACAACAGTTGTCATCTCTGATGTTGAA----TTAGGTAATAAAG 7893 ||| | || ||||||| ||| | ||||| ||| | || | ||| ||| |||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCAT---TGAGGGTGTAACACTTAC-TAACAAAG 4013 Query 7894 AAACATTACTACTTGATAACGGATTTGATGTAGAAGTCGATGTAAGCGTCATAGATCCAT 7953 | |||||||||||||||||||| || || ||| | ||||| ||| | || |||| Sbjct 4012 ACTTTTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCAT 3953 Query 7954 TTCGAATTACCGGCAAGCAACGCAAATTGATATTCGCA-TTGTGTAACGATATAGAAGCT 8012 ||| || | |||||||| | | ||||||| ||||| ||||||||||||||| Sbjct 3952 ACAAAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTG-AACGATATAGAAGCT 3894 Query 8013 CATACAGGACAACCTCGAGATTATATGAGGCAAATGTTCCAAGATTATGTGAAGTTT-CT 8071 |||||||| || | ||||||||||||| | | |||||||| ||||| | || | || Sbjct 3893 CATACAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGT-ACGTGTGCT 3835 Query 8072 GTATGGCTATGAAGAACGCATATCTTTATCAAATTGTTCTCGAACTATAGCTAAGCAAAT 8131 || ||||| || || |||||||| | | |||||||| | | | || | ||||| Sbjct 3834 ATACGGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAAT 3775 Query 8132 TATAGA---AGCGATGTTTGAGTGGATTTTTACAAATGCGATTCCATTAAATTATAAAAC 8188 |||||| ||| | |||| ||||| || || || || | | |||||||| Sbjct 3774 TATAGATGTAGCAA---TTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAAC 3718 Query 8189 AAGCAAATTAATGAAAGAAGATAAAAATTATCTTTATTGGGCAACTGTTACGCGTCATTG 8248 ||| | |||| || | || | || | | | || ||| ||| | | | | | || Sbjct 3717 AAGTGATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTG 3658 Query 8249 CATTATATGCGGAAAGCCTCACGCTGACTTAGCACATTATGAAGCAGTCGGTAGAGGCAT 8308 | |||| || || ||| || || || ||||||||||| ||||||| ||| | || Sbjct 3657 CGTTATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACG 3601 Query 8309 GAACAGAAACAAGATGAATCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCA 8368 |||||| |||||| | || | | |||| | ||||||| ||||| | ||||| Sbjct 3600 CAACAGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCA 3541 Query 8369 CAACGAGCAACATGCAATTGGTGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACT 8427 || |||||||| | || || | | | |||| || | || ||||| || | | | Sbjct 3540 TAAAGAGCAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATT 3482 Query 8428 CGTGGATAAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 8477 | ||| | | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3481 CATGGGTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 134 bits (148), Expect = 4e-27 Identities = 273/411 (66%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 11470 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 11529 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 11530 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 11583 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 11584 GTATCGAACTACAACCTAAATNNNNNNNNNNNNNNNNNNNNGGGAAGCAAAGACCGATTA 11643 ||||| ||||||| | || || || ||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 11644 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 11703 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 11704 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 11763 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 11764 ATGTGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTAT 11823 |||| || | || |||||||||||||| ||||| ||||||||| |||| ||| | | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 11824 ATGAGGACTTAGTGAAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGAT 11874 |||| || || || || ||||| || | || | || | || ||||| Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141765680258592