Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq16 118 8e-22 seq126 89.7 4e-13 seq35 84.2 2e-11 >seq16 Length=31725842 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| || || | ||||||||| || || ||||| ||||||||||| Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| || ||||| | |||| | || || || ||| Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| ||||||| |||||||||| || ||| || Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || ||||||||||||||||| ||||| || Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq126 Length=6421402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||| | || | ||| || | | ||||||| | || || ||||| ||||||||||| Sbjct 2409811 GCCAGCACGGAGTCTCAATGCAAGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGA 2409870 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | | | | | ||| | ||| || ||||| | |||| | || || || || Sbjct 2409871 CAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGG 2409930 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| ||||||| |||||||||| || ||| | Sbjct 2409931 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGC 2409990 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAT 15185 || | || ||||| || ||||| || |||||||| ||||| ||||| || | ||| Sbjct 2409991 CTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTTGGCAAT 2410047 >seq35 Length=22943593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 |||||||| || || ||||| ||||||||||| || || | | | ||||| | | Sbjct 21587379 ATGAAGGGGGGACTCCTTTTGAATGTTGTAATCA--GACAAAGCATGTCCATCTTCCACT 21587322 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 || || ||||| |||||| || || || |||||||||||||| || || Sbjct 21587321 TGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 21587262 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| | |||| ||||||||||||| ||| || || | || ||||| || | | Sbjct 21587261 TTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTT 21587202 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179 | ||||||||||||||||| || || || Sbjct 21587201 GCAAGAGTTTTTACAAAAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357373579681265