Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17]
4,229 sequences; 2,618,204,639 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq16 118 8e-22
seq126 89.7 4e-13
seq35 84.2 2e-11
>seq16
Length=31725842
Score = 118 bits (130), Expect = 8e-22
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || ||||| || || | ||||||||| || || ||||| |||||||||||
Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||| | ||| || ||||| | |||| | || || || |||
Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| ||||||| |||||||||| || ||| ||
Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || ||||| || || || ||||||||||||||||| ||||| ||
Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254
>seq126
Length=6421402
Score = 89.7 bits (98), Expect = 4e-13
Identities = 162/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||| | || | ||| || | | ||||||| | || || ||||| |||||||||||
Sbjct 2409811 GCCAGCACGGAGTCTCAATGCAAGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGA 2409870
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
| | | | | | ||| | ||| || ||||| | |||| | || || || ||
Sbjct 2409871 CAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGG 2409930
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| || || ||| ||||||| |||||||||| || ||| |
Sbjct 2409931 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGC 2409990
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAT 15185
|| | || ||||| || ||||| || |||||||| ||||| ||||| || | |||
Sbjct 2409991 CTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTTGGCAAT 2410047
>seq35
Length=22943593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/209 (69%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030
|||||||| || || ||||| ||||||||||| || || | | | ||||| | |
Sbjct 21587379 ATGAAGGGGGGACTCCTTTTGAATGTTGTAATCA--GACAAAGCATGTCCATCTTCCACT 21587322
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
|| || ||||| |||||| || || || |||||||||||||| || ||
Sbjct 21587321 TGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 21587262
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
||| | |||| ||||||||||||| ||| || || | || ||||| || | |
Sbjct 21587261 TTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTT 21587202
Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179
| ||||||||||||||||| || || ||
Sbjct 21587201 GCAAGAGTTTTTACAAAAATCTGTATCTT 21587173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357373579681265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |