Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_011614.1 Length=42526 Score E Sequences producing significant alignments: (Bits) Value seq371 517 3e-142 >seq371 Length=40469 Score = 517 bits (572), Expect = 3e-142 Identities = 857/1233 (70%), Gaps = 9/1233 (1%) Strand=Plus/Minus Query 9297 CAATTTGAAATTGAAAGCACTATAATCGCTACGCTACTTAAACAACCGGACGTATTAGAA 9356 |||| |||||||||||| ||| | ||||||| ||| | | |||| ||| | |||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 9357 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 9416 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 9417 GTAATGGACGCCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 9476 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 9477 GGGTTTTTAGATGCAGATACTATCACTAAACTTTATAACTCCGATTTCATTGGATACGGA 9536 || ||| | ||| || |||||| | |||||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 9537 TTCTTTGAACGTTACCAACAGGAACTATTGGAAAGTTATCAACTCAACAAAGCAAACGAA 9596 |||||||| | || ||||| || |||| ||| |||||| | | ||||| || ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 9597 -TTGGTCACTGAGTTCAAACAACAACCTACGAATCAAAACTTTAACAACTTGATTGATGA 9655 || | | | | || |||||| | |||| | ||| ||||| | || |||| | Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTACACCTGAAACTTTTAATGAAATGGTTGAGAA 2011 Query 9656 ACTCAAGGATTTAAAAACAATTACTAACAAAAAAGAAGATGGAAC-CAAGAAGTTTGTTG 9714 ||| || || |||| | || || | ||||||||| ||||| || ||| | | || | Sbjct 2010 ACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGCTA 1952 Query 9715 ANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTACA 9774 | ||| || ||| ||| | | | | || || || | Sbjct 1951 AACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATATA 1892 Query 9775 AGCTCATGGATTACAAAATAGGGGGATTAGAGCCATCACAATTAATCGTCATCGCAGCGC 9834 | |||||||| || ||||| || || || |||||| ||||| || || || || || | Sbjct 1891 AACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGCTC 1832 Query 9835 GTCCCTCAGTGGGTAAGACAGGTTTTGCATTAAACATGATGCTGAACATAGCACGAAATG 9894 |||| || |||||||| || ||||||||||| |||||| |||||| ||| | | | Sbjct 1831 GTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACAAG 1772 Query 9895 GATATAAAACATCTTTCTTTAGTCTCGAAACAACTGGCACATCAGTATTGAAACGTATGT 9954 | | ||||||| ||||||||| | ||||||||||| | | | || || | || Sbjct 1771 GCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATTGC 1712 Query 9955 TATCAACAATTACTGGTATTGAGTTAACCAAGATAAAAGAAAT-CAGGAACTTAACGCCG 10013 |||| || || |||||||| ||||||| | || ||| | | || || || | |||| Sbjct 1711 TATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGCCA 1653 Query 10014 GATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATATT 10073 |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | ||| Sbjct 1652 AATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACATT 1593 Query 10074 TCTGATAAAAGTAATGTCACACCGCAAGATGTCCGAGCACAAGCAATGAGGTACTCAGAC 10133 ||| | || | ||||| ||||| | |||||||||| |||| | | ||| Sbjct 1592 AATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGAC 1533 Query 10134 GAGCAACAAGTTATTTTTATAGATTATCTCCAACTGATGGATACTGATGCGAAAGTTGAT 10193 | | ||||||||| ||||| ||||| || ||| | ||||| || ||| | || |||||| Sbjct 1532 AAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTGAT 1473 Query 10194 AGACGTGTAGCAGTAGAAAAAATATCACGCGATTTAAAGATAATTGCTAACGAGACGGGC 10253 ||||| || ||||| ||||| ||||||||||| || || || || || || || || || Sbjct 1472 AGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGGA 1413 Query 10254 GCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTTGAGTCTAGACAGGATAAAAGA 10313 ||||| || ||| | ||||| ||| |||||||||| ||||| || ||| | |||||| | Sbjct 1412 GCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACGT 1353 Query 10314 CCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCAATG 10373 || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | || ||| Sbjct 1352 CCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGATG 1293 Query 10374 CTACTTTACCGTGATGATTACTATAACCGTGACGAAGATGATGGTATCACAGGCAAATCT 10433 | | || | ||||||||||| | | || |||| ||| | || | || |||||| Sbjct 1292 ATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGAT-GAAT--CTGGTAAATCT 1236 Query 10434 ATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTCGAG 10493 || ||||||||||| |||||||| |||||||| || ||||| || | |||||||| || Sbjct 1235 ATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGAA 1176 Query 10494 TATTACAAGAAGACGCAGAGGTTTTTCACATGA 10526 | ||||||||| || |||||||||||||||||| Sbjct 1175 TTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 374 bits (414), Expect = 2e-99 Identities = 574/811 (71%), Gaps = 12/811 (1%) Strand=Plus/Minus Query 6314 GATATTAGTTACTCCACAAATAGAAATAGAGCTAGGGAGTTTAACGGTATGGAAGAAGCG 6373 || ||||| ||||| || | | |||||| || |||||||||||| | || |||| | Sbjct 5266 GAAATTAGCTACTCAACGCAGTTTAGTAGAGCAAGAGAGTTTAACGGTTTAGATGAAGTG 5207 Query 6374 AGTATCAATATGGATTATCACAAAGCAATCAAGAAAACAGTGACAGAAACAATTGAGTAC 6433 | || ||||| ||||||| || || || | ||| | |||| | | | || Sbjct 5206 ACAATTGATATGTCATATCACATGGCGATTAAACATACACATATAGAAGAAGATAAATAT 5147 Query 6434 GAGGAGGTAGAACATGACTGAACAAACGTTATTTGAACAGTTGAACAGTAAAAATGTGAA 6493 |||||| |||| |||| |||| |||| |||||||||||||| |||| | || || Sbjct 5146 GAGGAGTTAGATTATGAGTGAAAAAACATTATTTGAACAGTTAAACACAATTAACGTATC 5087 Query 6494 TGATCATACAGAACaaaaaaaTGGAT-TAACTTATCTAGCATGGTCATATGCACATCAAG 6552 ||||||| ||| | || ||||| | ||||| || |||| ||| || |||||||| || Sbjct 5086 TGATCATGTTGAAAAGAAGAATGGCTATAACT-ATTTAGCTTGGACACATGCACATGAAC 5028 Query 6553 AGTTAAAAAAGATTGACCCTAACTACACAGTAAAAGTGCACGAGTTTCCACACCCAGATA 6612 | | ||||| ||||||| ||||| | |||| | || |||||||||||||| |||| Sbjct 5027 AACTTAAAAATGTTGACCCCAACTATGAAATAAAGATACATGAGTTTCCACACCCGGATA 4968 Query 6613 TTAACACAGAA--AATTATTTTGTACCTTATTTGGCTACACCAGAAGGCTATTTTGTACA 6670 | | || | | || ||||| ||||||||| | || || |||||||| ||||||||| | Sbjct 4967 T-AGCAAATGACCAAGTATTT-GTACCTTATCTAGCAACTCCAGAAGGTTATTTTGTAAA 4910 Query 6671 AGTATCTGTGACTGTGAAAGGTAGTACAGAGACTGAATGGCTTCCGGTATTGGACTTTAG 6730 |||||| | | | ||||||| ||| || | |||||| | || ||||| ||||||| Sbjct 4909 AGTATCAATCATATTAAAAGGTATTACCGAATCAGAATGGTTACCAGTATTAGACTTTAA 4850 Query 6731 AAATAAATCGCTTGCTAAAGGTAGTGCAACAACTTTTGATATCAACAAAGCACAAAAACG 6790 ||| || ||| | || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 4849 AAACAAGTCGTTAGCGAAAGGGCAAGCAACTACATTCGATATCAATAAAGCTCAAAAACG 4790 Query 6791 ATGTTTCGTTAAAGCTTCGGCTTTACACGGTTTAGGTTTATATATCTACAACGGCGAGGA 6850 || || |||||||| | || |||||||| |||||| |||| ||||||||| | || || Sbjct 4789 TTGCTTTGTTAAAGCAGCAGCATTACACGGCTTAGGTCTATACATCTACAACCGTGAAGA 4730 Query 6851 ACTTCCAAGTGCAAGTGACAATGATATTACAGAACTAGAGGAGCGTATCAATCAGTTTGT 6910 | | || | ||| ||| | ||| ||| ||||| || || | | ||||| Sbjct 4729 ATTACCGAATGCTAGTAGTGAAGATGCACAAGAGCTAGAAGATAAGATAGCTGAATTTGT 4670 Query 6911 GAACTTATCTCAAGAAAAAGGGCGAGATGCAACTATCGATAAAACGATGAGATGGCTAAA 6970 | | || ||||||||||| |||||||||| | || ||||| ||| | ||| || Sbjct 4669 ACGCATTTCACAAGAAAAAGGCAGAGATGCAACATTGGAAAAAACAATGCGTTGGTTAGG 4610 Query 6971 AATCTCTAACATTAATAAATTGAGTCAAAAACAAATCGCAGAAGCACACCAAAAATTAGA 7030 || || |||||||| || ||| ||| | ||| |||| || |||| |||| Sbjct 4609 CATTGAAAATATTAATAAGTTAAGTGGCAAAGGCTTGGCAACAGCAAACGCAAAACTAGA 4550 Query 7031 TGCGGGATTAAAACAATTGGATAGTGAGGAGAAATAATAATGTTAAACAGAATAGTATTA 7090 ||| |||||||||||||| || | ||||||| ||||||| || || | | ||| Sbjct 4549 TGCAGGATTAAAACAATTAGACA---AGGAGAATGAATAATG---AATTTAACAATCTTA 4496 Query 7091 GTAGGGCGATTAACAAAAGACCCAGAATTAA 7121 || ||| | ||||||||| |||| ||| Sbjct 4495 ACGGGACGAATCACAAAAGACTTAGAACTAA 4465 Score = 208 bits (230), Expect = 2e-49 Identities = 466/696 (67%), Gaps = 9/696 (1%) Strand=Plus/Minus Query 7481 GACTTACCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCACTCAAGA 7540 || |||||||||| | || |||||| ||| | |||| | | || ||| ||| | Sbjct 4120 GATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAA 4063 Query 7541 TGACGGTACAACAACAGTTGTCATCTCGGGCGTCGAATTAGGTAATAAAGAAACATTACT 7600 ||| || |||| ||| | ||||| ||| || | | ||| ||||| ||||| Sbjct 4062 TGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACT 4003 Query 7601 ACTTGATAACGGGTTTGATGTAGAAGTAGATGTAAACGTTATAGATCCGTTTAAAATTAC 7660 |||||||||||| || || || ||| ||||| || | || || | ||||| || Sbjct 4002 ACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAAATAAC 3943 Query 7661 CGGCAAGCAACGTCGAAAAATATTCGCGCTTGTCAAAGACATAGAAGAACATACAGGTCA 7720 | ||||||||| ||||| ||||||| ||||| || || ||||||| |||||||| Sbjct 3942 TGATAAGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCAC 3883 Query 7721 ACCAATGGACTATATGAGACATATGTTCATCGAGTATGTAAGAACGTATTACGGATATGA 7780 ||| || |||||||| || | ||| || |||||| | | ||||| || || Sbjct 3882 GCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGA 3823 Query 7781 TGAACGTATTTCACTAAGTAATTGTACGAGAACTCAAGCGAGTCGAATCATTGAAGCAAC 7840 ||| || || ||||| | ||||| | || | || |||| ||| || || | | | Sbjct 3822 TGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGC 3763 Query 7841 GCTTGACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGCAATCTACTGAA 7900 |||| |||| ||| | || |||| || || || || ||||| || ||||| | || Sbjct 3762 AATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAA 3703 Query 7901 ACAAGATAAATCATTCTTGTACTGGTCGACTGTTAACCGCAACTGTGTAATATGCGGAAA 7960 | || | | | || || ||| | | ||| | || | || || || || || || || Sbjct 3702 GAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAA 3643 Query 7961 ACCTCATGCTGATTTAGCGCATTATGAAGCAGTCGGTAGAGGTATGAACAGAGACAAGAT 8020 ||||| || |||| |||||| ||||||| ||| | || |||||| |||||| Sbjct 3642 ---GCATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGAT 3586 Query 8021 GAATCACTATGACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGC 8080 | || | | |||| | ||||||| ||||| | ||||| || |||||||| | Sbjct 3585 AGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGA 3526 Query 8081 GATTGG--TGTTAAGTCATTTGATGATAAATATCAATTGCATGACTCGTGGCTAAAAGTT 8138 || || || ||| || || | || ||||| || | | || ||| | | ||| Sbjct 3525 CATGGGCATGGATAGT--TTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTT 3468 Query 8139 GATGAGAGGCTCAACAAAATGCTGAAAGGAGAGAAA 8174 || ||||| || ||||||||||||||||||| |||| Sbjct 3467 GACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 158 bits (174), Expect = 3e-34 Identities = 304/450 (68%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 10948 ATATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAACGCTAAGAAAGTTGAGT 11003 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 11004 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 11059 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 11060 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAACCGAAATTTNNNNNNN 11117 | |||| || |||| | ||||| ||||| |||||||||| || | Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 11118 NNNNNNNNNNNNGGAAACAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 11177 | |||||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 11178 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 11237 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 11238 AAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCGC 11297 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||| | Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 11298 CTAAATACACAGGTCAAGAATGGATGGTATATGAAGACTTAGTGAAAGTCAGACGTAAAA 11357 |||| ||||||||| |||| ||| | |||||||| || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 11358 GAAAAAGAGAAATGAAGTGATTTAATGCAA 11387 | || | || | || |||||| ||| || Sbjct 364 GCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135954772093424