Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq85 185 1e-41 >seq85 Length=11339561 Score = 185 bits (204), Expect = 1e-41 Identities = 212/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||| ||||||| | || ||||| ||||| |||| || || || | ||| Sbjct 6903601 AAAGGACAACCCCTCACATTAGTGCAGATGAGAGACTGGATGGAAGCAGTGTTGATGATC 6903542 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || || || || |||||||| ||||| |||||| Sbjct 6903541 TTAAAACCTACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGTGGGGAACAGATGGGA 6903482 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || ||||||| ||||||||||| |||||||| |||| || | ||| ||||||||||| Sbjct 6903481 TTACCCATGAGTCCTTTCAAGGAGAACGGAGCTCCCATTTCCACCATGGTCTCACCGAAG 6903422 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || || | || || || ||||| || | | | | | || || || ||||| || | | Sbjct 6903421 ATAGCGTCTGGCCGAGGCTTTTCCACCAGCAGGGCGGGATACAGCTCCACAGCATCAATG 6903362 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || ||||||||||||||||| ||||| || |||||||| ||| Sbjct 6903361 TCACCGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCT 6903317 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || |||| |||| ||| |||| ||||| || || ||||| || || ||||| || Sbjct 6901995 GTCTGGAACAGACGCTCATCATCCCACTCCGGATGCTCCTGTTTAAGCACGTCGCACACT 6901936 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| |||||||| |||||||| | ||| ||||||| || || Sbjct 6901935 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGCACTAGGCCGAAG 6901876 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| || |||||||| | || || | ||| | || | ||| || Sbjct 6901875 ACCTCCTGGCCCACGGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGT 6901816 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||||||| |||||||| ||||| || ||||| || || ||||| Sbjct 6901815 ACCTGGGTATCTTTGACTGTGGGAGGGTACATCTCTCCATCAAT 6901772 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| | || ||||| || || || Sbjct 6900252 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACAGGAGGGAGGACTCGGGTG 6900193 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || ||||||||||| ||||||||||||| ||||||| Sbjct 6900192 TAGTAGGAAAGGTTAGAGAAGGCTTCCCAGCTTCTGTAGCCATAATCCGAGTTGTAAGTT 6900133 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || || |||||||||| | || |||||| Sbjct 6900132 GGTGGGCTGTCAATCAAATGTGATCTGGCT 6900103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723689741928600