Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_012784.1 Length=44492 Score E Sequences producing significant alignments: (Bits) Value seq371 174 4e-39 >seq371 Length=40469 Score = 174 bits (192), Expect = 4e-39 Identities = 261/371 (70%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 31324 TATCATTGGTAAAATTAAAGATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACT 31383 ||| |||| ||||||||| ||| || || ||||||||| | |||| ||||| Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 31384 TAATAAATTAATTGAAGGCTTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACC 31443 || ||| | || ||||| | |||||||| | || || | || ||||| || |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 31444 TAG------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 31497 || ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 31498 CGGTAAGATTGCACGTGATACATTCGCTACAGTTGGGGATAAAGGACGTGGAAATGGTCC 31557 |||||||||||| || |||||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 31558 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCTAA 31617 |||||| || ||||||||||| | || || |||||| || |||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 31618 TACAGACACTACTGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 31677 | ||| || || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 31678 TTCAATGTTAA 31688 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 149 bits (164), Expect = 2e-31 Identities = 282/420 (67%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 13801 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 13860 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 13861 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 13914 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 13915 GTATCGAAATACAACCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGACCGATTA 13974 ||||| |||||||||| || | || |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 13975 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 14034 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 14035 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 14094 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 14095 ATGCGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGGATGGTAT 14154 ||| || | || |||||||||||||| ||||| ||||||||| |||| ||| | | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 14155 ATGAGGACTTAGTGAAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 14214 |||| || || || || ||||| || | || | || | || |||||| ||| || Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 10681 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATATGCGGAAAGCCTCACGCAG 10740 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 10741 ACCTGGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAAATGAACCACTATG 10800 | || ||||||||| ||||||| || | || |||||| ||| || | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 10801 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCGATTGGCGTTA 10860 |||| | ||||||| ||||| | ||||| || |||||||| | || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 10861 AGTCGTTTGA-TGATAAATACCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 10919 | | |||| | | | || || || || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 10920 AATAAAATGCTGAAAGGAGAGAAA 10943 || |||||||||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Score = 82.4 bits (90), Expect = 2e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 31785 GTAAAGGTACAAAGTGGCTTGGCGATAAAGTTGGTGATGTCATGGACTTTATCGATAATC 31844 ||||||||| | | |||||||||||||| ||||| ||||| | || | || ||||| | Sbjct 28067 GTAAAGGTAAAGACTGGCTTGGCGATAAGGTTGGAGATGTGCTTGATTGGATAGATAAAC 28008 Query 31845 CAGGCAAACTTTTAAATTATGTACTTCAAGCGTTTGGAGT 31884 | || ||| | |||||| | ||| | ||||||||||||| Sbjct 28007 CGGGTAAATTGTTAAATAAGGTATTAGAAGCGTTTGGAGT 27968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142245656153292