Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 104 4e-17 seq88 87.8 3e-12 seq34 87.8 3e-12 >seq1 Length=78885850 Score = 104 bits (114), Expect = 4e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||| ||| || | || | ||||| || | || | ||| ||||| || ||||| | Sbjct 12367040 GTGATCTGGATAGGATTAGCTGCAGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAA 12367099 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 |||| || ||| || || | |||||| | || |||| ||| || || || || Sbjct 12367100 CCCTGCTTCCAACCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATA 12367159 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 || ||||||| |||||||||||| || ||||||| | | ||| || ||||| |||| | Sbjct 12367160 TGGATGTTCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGA 12367219 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | || ||||| || || ||||||||| |||| Sbjct 12367220 ACAGTTTTCTGAGAGATTTCCCACACCATCTT 12367251 >seq88 Length=9715273 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | |||||| | || |||| ||| || || || || | Sbjct 5567483 CCTGCTTCCAACCATAGAAGTGCATACTGGTGAGCTTGCCATAGTTAGGCTCAGCAATAT 5567424 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 ||||||||| |||||||||||| || ||||||| | | ||| || ||||| |||| || Sbjct 5567423 GAATGTTCAAAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCTGCCATCTTGAGAA 5567364 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||||| || || |||||||| ||||| Sbjct 5567363 CAGTTTTCTGAGAGATTTCCCACACTGTCTT 5567333 >seq34 Length=23970518 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| | ||||| ||||||||| | | ||||||||||||||| || | | | Sbjct 19377071 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCTCTCTTCT 19377130 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | ||||| || |||||||| |||| ||| | | || || | || ||||||||||| || Sbjct 19377131 TCAGCCAGAAGATGGCCGC-AAAGGACCCCGAGAAGAACACTCCTTCCACGGCCGCGAAG 19377189 Query 160064 GCCACGAGCCTCTCACC 160080 ||||| | |||||| || Sbjct 19377190 GCCACCACCCTCTCCCC 19377206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795113166108240