Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq148 127 2e-24 seq40 113 5e-20 seq15 113 5e-20 seq85 104 3e-17 seq117 102 9e-17 seq12 95.1 1e-14 seq22 91.5 2e-13 seq41 84.2 2e-11 >seq148 Length=4887613 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||||| |||| || ||| || ||||||||||| || || Sbjct 4050546 CCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAA 4050605 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 4050606 AGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 4050665 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | || | | || || || | |||||| Sbjct 4050666 ATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACT 4050725 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| ||||| ||||| || || |||||||| |||||| Sbjct 4050726 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | || || |||| || |||||| |||||||||||||| || Sbjct 4050317 GCCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGA 4050376 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 4050377 AAGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 4050436 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| ||| | || | | || || || | ||||| Sbjct 4050437 GATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCAC 4050496 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 4050497 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| ||| ||| || ||||| |||||||| || Sbjct 4050774 CCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 4050833 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||| ||||| || || || | | ||||||||| | || Sbjct 4050834 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050893 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | || | | || || || | |||||| Sbjct 4050894 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACT 4050953 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| ||||| || || || || |||||||||||| Sbjct 4050954 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 4051004 >seq40 Length=22651954 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 ||||| |||||||| || ||||| || | || || ||||| |||||||| ||||||| Sbjct 7366524 TGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGA 7366583 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 ||||||||||| | || | || ||||||||| ||| || |||| || | | Sbjct 7366584 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATG 7366643 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| || | ||||| || | |||||||| ||||| ||||| || || || ||||| Sbjct 7366644 GTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATC 7366703 Query 46589 TGCAT 46593 ||||| Sbjct 7366704 TGCAT 7366708 >seq15 Length=34776858 Score = 113 bits (124), Expect = 5e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | | | |||||| ||||| || |||||| ||||| ||||||| || Sbjct 23700267 CCTCCCCTCAGATGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAGAC 23700326 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || |||||||||| ||| || |||| | |||||||| || || Sbjct 23700327 AGGGTGCGTCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTTGGGGGG- 23700385 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | |||||||||||| |||||| ||||| || | || || || | ||| || Sbjct 23700386 ATGCTCTCCTTGTCTTGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTACT 23700445 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| | ||||| || || || || | ||||||||||| Sbjct 23700446 TCGAGGGTGATGATGTTGCCAGTAAGGGTCTTCATGAAGATTTGCAT 23700492 >seq85 Length=11339561 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | |||||| |||| || |||||| ||||| ||||||||||| Sbjct 11133857 CCTCCCCTCAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 11133916 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||| | || || |||||||||| || || |||| | ||||||||| | || Sbjct 11133917 AGGGTGCATCCATCTTCCAGCTGCTTGCTAGCAAAGATCAGCCTCTGCTGGTCAGTGGGG 11133976 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || | ||||||| |||||| ||| | || | ||||| || | ||| || Sbjct 11133977 ATGCCCGCCTTGTCTTGGATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGTTCAACC 11134036 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | | ||||||| ||||| || || || || | ||||||||||| Sbjct 11134037 TTGAGGATGATGGTCTTGCCAGTGAGGGTCTTCATGAAGATTTGCAT 11134083 >seq117 Length=6347111 Score = 102 bits (112), Expect = 9e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || |||||| | | || || ||||||||||| | || Sbjct 1554173 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGCTTGCCTGTAAA 1554114 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | || || || ||| |||||| ||| | | Sbjct 1554113 GATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATT 1554054 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | |||||| |||| |||||||| ||||| ||||| || || | Sbjct 1554053 CTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAT 1553994 Query 46582 AAAGATTTGCATTTTG 46597 ||||||||||||||| Sbjct 1553993 GAAGATTTGCATTTTG 1553978 >seq12 Length=34595640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 || ||||| || |||| ||| ||| || |||| |||||||| || ||||| | | Sbjct 22518583 CGAAACACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCA 22518524 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||||| ||||||| ||||||||||| | || | || ||||||| Sbjct 22518523 TCCTCCAGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 22518464 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || ||| || ||| || | ||||| || ||||| || | |||||| Sbjct 22518463 TCTTGGATTTTGGCTCTGACATTCTTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATG 22518404 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| | | || ||||| ||||| Sbjct 22518403 GTCTTGCCCGTCAGGATCCTCACGAAGATCTGCAT 22518369 >seq22 Length=29172479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || ||| || | ||| |||||||| || |||| | | || || Sbjct 11894362 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCCTC 11894421 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| ||| |||| ||||||| ||||||||||| | || | || ||||||||| Sbjct 11894422 CAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTG 11894481 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||| || |||| || ||||| || | ||||| || | ||||||| || Sbjct 11894482 GATTTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCCTT 11894541 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||||| || || | ||||| ||||| Sbjct 11894542 GCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq41 Length=20498451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| |||| || |||||| |||||||||||||| || || |||| | || || Sbjct 848203 CACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCATCCATCTTC 848262 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| | ||| ||||| | || | | ||||||||| Sbjct 848263 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCAGGGGGGATTCCCTCCTTGTCTTG 848322 Query 46504 GATCTT 46509 |||||| Sbjct 848323 GATCTT 848328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565208520085080