Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_014460.1 Length=41207 Score E Sequences producing significant alignments: (Bits) Value seq371 154 4e-33 >seq371 Length=40469 Score = 154 bits (170), Expect = 4e-33 Identities = 298/441 (68%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 35955 ATATTTGATAT-TTAGAGG--TGGCACAGT-GAGTAAATACAACGCTAAGAAAGTTGAGT 36010 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 36011 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 36066 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 36067 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAAATACAACCGAAATTTNNNNNNN 36124 | |||| || |||| | ||||| ||||| |||||||||| || | Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 36125 NNNNNNNNNNNGGGAAACAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 36184 || |||||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 36185 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 36244 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 36245 AAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCGC 36304 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||| | Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 36305 CTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTAAAA 36364 |||| ||||||||| |||| ||| | ||||| || || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 36365 GAAAAAGAGAAATGAAGTGAT 36385 | || | || | || ||||| Sbjct 364 GCAAGAAAGCTAAGAGGTGAT 344 Score = 127 bits (140), Expect = 5e-25 Identities = 189/265 (71%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 32943 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATTTGTGGAAAGCCTCATGCTG 33002 |||| ||||| |||||| ||||| | || || || || ||||| |||| |||| | Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGC---ATGCAG 3635 Query 33003 ACCTAGCACATTATGAAGCAGTCGGTAGAGGCATGAACAGAAACAAGATGAATCACTATG 33062 | |||||||||||| ||||||| ||| | || |||||| |||||| | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 33063 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCGATTGGCGTTA 33122 |||| | ||||||| ||||| | ||||| || |||||||| | || ||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 33123 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCATGGCTAAAAGTTGATGAGAGGCTC 33181 | | |||| | | | || ||||| || | | |||||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 33182 AATAAAATGCTGAAAGGAGAGAAAG 33206 || |||||||||||||||| ||||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAAG 3431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131734184059362