Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 1e-14 seq57 93.3 5e-14 seq5 93.3 5e-14 >seq27 Length=25514964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 24372446 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 24372505 Query 136777 GGGAACAGCTTTTAGATATATTTT 136800 || || ||| || | |||||| Sbjct 24372506 CGGGCCA-CTTAAAGTTTTATTTT 24372528 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 325514 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 325456 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 24219838 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 24219780 >seq57 Length=14644473 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 10754766 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 10754824 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 10795168 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 10795110 >seq5 Length=42019962 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2115370 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2115312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588944865256200