Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=78885850 Score = 104 bits (114), Expect = 3e-17 Identities = 472/735 (64%), Gaps = 25/735 (3%) Strand=Plus/Plus Query 105900 CAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAA 105959 ||||| ||| ||||| | | | |||||| |||||||| | || || ||||||| Sbjct 12367378 CAATCTGAAATTCTCCTGACAAGATTCTTCGAGTGTAGATGTTGCTAGTATAAGGTTCAA 12367437 Query 105960 AGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAA 106019 | | || ||||| |||||||| || || || || || || || ||||| || || | | Sbjct 12367438 TGGACTCGTTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGTATTGGGGCAATAAGTA 12367497 Query 106020 GACTGTTACGAAGACCCTTTTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG--TAG 106075 |||||| | | ||| | | ||| || |||||||||| | |||||| ||| Sbjct 12367498 AACTGTTTCTTATACCATACT--TTGCAATCTTCTCCTTGAGAAGTTTCCAGTCCCATAG 12367555 Query 106076 TTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAA 106135 | | | || | || |||| |||| ||| | ||| | |||| | ||||| Sbjct 12367556 GTCTG-TGGGAGTAACATTCC-ACATTTCATACCAAAGAATTCCTTTGCTTACTGGAGAG 12367613 Query 106136 CCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGAT 106195 |||||| | || ||||| | | || | | || | |||||||| || ||||||| | Sbjct 12367614 CCCTCATAGGTTTCATATGGGTCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGGGCT 12367673 Query 106196 GCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA---TCA 106252 | | ||| || || |||||||| | |||| || ||| || || | ||| Sbjct 12367674 ACATAATAAATAGTCTCAAAGATTTGCTTGTTCAATAACTGGGCCTC---TGGACTTTCA 12367730 Query 106253 AATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGT 106312 || | || | || ||||| ||| || || ||||||| || | ||||| || Sbjct 12367731 AAAGGATATCTCATCAGGATAAAAGTATCTGCCAGGTCTTGAACCCCAATTCCAATGGGG 12367790 Query 106313 CTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGAC 106371 | || | |||| || | || ||| || || || | ||| | | ||| | Sbjct 12367791 CAATGGTGTTTATTTGATAAGTGTGCC-TCTGGGACAGGGTAGTAGTTTATATTAATAAT 12367849 Query 106372 TCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAA 106428 | || | |||| | ||||| |||| |||| ||| | ||| | | | ||| | Sbjct 12367850 TTTATTCAAATTTCGG---ACAATGACTTTAGTGACTTCTGCCAATTTCTTAAAGTCATA 12367906 Query 106429 AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGC 106488 ||| | ||| |||||||| || ||||| | || ||||| || ||||| || Sbjct 12367907 TGTGTGT---TCTGATATGACATACATTTTCAGGGCCAGGGAAGCCAAGTTACAAACTGC 12367963 Query 106489 CGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGT 106548 |||||| || || ||||||| |||||||| |||| ||| | || || || Sbjct 12367964 AACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATTGT 12368023 Query 106549 CCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGT 106608 |||| |||| |||||| ||||| | || | | ||| |||||||||||||| || || Sbjct 12368024 TCCCAGGTTCTGTTGGTTGCTCTTCTGATTATAGGAATCTTTGTAGAGCATGTATGGGGT 12368083 Query 106609 CCCCGTCTCCGTCTG 106623 || ||||| ||||| Sbjct 12368084 GCCTGTCTCTGTCTG 12368098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589949612139960