Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq148 161 2e-34 seq117 149 1e-30 seq126 134 3e-26 seq39 125 2e-23 seq41 111 3e-19 seq22 100 6e-16 seq84 87.8 4e-12 >seq148 Length=4887613 Score = 161 bits (178), Expect = 2e-34 Identities = 172/226 (76%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| |||||||||||||| || ||||||||||| | |||||| Sbjct 4050551 TCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGT 4050610 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||| ||||| ||||| Sbjct 4050611 GCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCC 4050670 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||| || || || || ||| || ||||||||||| || ||| ||||||||| Sbjct 4050671 TTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATC---ACTGGGTTCCACTTC 4050727 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| || |||| || || || || | |||||| Sbjct 4050728 CAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 Score = 152 bits (168), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| |||||||| || || ||||| || | |||||| | |||||||| Sbjct 4050792 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 4050851 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 4050852 AGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4050911 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||| || ||| ||||||||| ||||| | ||| Sbjct 4050912 ATCTTGGCCTTCACATTCTCAATGGTATC---ACTGGGTTCCACTTCTAGGGTGATGGTC 4050968 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 4050969 TTGCCAGTCAGGGTCTTCACGAAAATTTGCATTT 4051002 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || || |||||||| || | |||||| | |||||||| Sbjct 4050336 ACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4050395 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 4050396 AGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4050455 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||||||||| || | ||||| || ||||| | ||||| Sbjct 4050456 ATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTG 4050515 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 4050516 CCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq117 Length=6347111 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || ||||| ||||| || | |||||| |||||||| Sbjct 1554190 ACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCC 1554131 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 1554130 AGCTGCTTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGG 1554071 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||||||||| || ||| ||||||||| || || | ||| Sbjct 1554070 ATCTTGGCCTTTACATTCTCAATGGTATC---ACTGGGTTCCACTTCCAGAGTGATGGTC 1554014 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || | ||| | |||||||| Sbjct 1554013 TTGCCAGTCAGGGTCTTCATGAAGATTTGCATTT 1553980 >seq126 Length=6421402 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| |||| ||||| ||||||| |||||||| |||||||| | | ||| | Sbjct 2409820 GAGTCTCAATGCAAGATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGACAAAGTACG 2409879 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||| ||| || |||||||| || ||||| || | ||| || || |||||||| ||||| Sbjct 2409880 TCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTC 2409939 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || || || || || || ||||| || ||| | ||||| || Sbjct 2409940 CTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGT 2409999 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||||||||| | ||||| Sbjct 2410000 GATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCAT 2410038 >seq39 Length=21454635 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||||||| ||||| ||||| ||| |||| |||||||| |||||||| | | ||| | Sbjct 17272297 GAGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACG 17272238 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || |||||||| || ||||| || | ||| || || ||||||| ||||| Sbjct 17272237 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTC 17272178 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || || || || || || || || || | |||||| | ||| || || || || Sbjct 17272177 CTTATCCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGT 17272118 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| | | || ||||||||||| | ||||| Sbjct 17272117 GATGGTCTTCTCCATAAAGGTTTTTACGAAAATCTGCAT 17272079 >seq41 Length=20498451 Score = 111 bits (122), Expect = 3e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || |||||||| || || |||||||| || | || || | |||||||| Sbjct 848204 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCATCCATCTTCC 848263 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | |||||||| || || || || || |||||||| Sbjct 848264 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCAGGGGGGATTCCCTCCTTGTCTTGG 848323 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| | ||||||||||||||| Sbjct 848324 ATCTTGGCCTTCATGTTCTCAATGGTGTC 848352 >seq22 Length=29172479 Score = 100 bits (110), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| | || ||||| || | |||| ||| ||||| || Sbjct 11894363 ACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCCTCC 11894422 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || | || || || || || || ||||| || || ||||| || |||||||| Sbjct 11894423 AGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 11894482 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||| |||| ||||||| ||| ||||| || ||||| | | | Sbjct 11894483 ATTTTGGCTTTGACATTCTTGGTGGTGTC---ACTGGGCTCCACCTCGAGGGTGATGGCC 11894539 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || | ||| | ||||| Sbjct 11894540 TTGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq84 Length=11570013 Score = 87.8 bits (96), Expect = 4e-12 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 194941 AGAGTGGACTCTTTTTGAATATTGT---AATCGGCAAGAGTTCTCCCATCTTC--GAGCT 194995 |||||||||||||| || || |||| ||| | | | || | |||||||| | Sbjct 8923806 AGAGTGGACTCTTTCTGGATGTTGTTTGTATCAGAAGGTGTGCGGCCATCTTCCTTTCTT 8923865 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 ||| ||||| ||||| | | || ||||| || |||||||||||||| || || | Sbjct 8923866 ACTTGCCTGCAAAGATGCGCCCCTGCTGGTCAGG-GGAATGCCTTCTTTATCCCCGATCT 8923924 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| | ||||||| |||| || ||| ||||| || ||||| | ||||| || | Sbjct 8923925 TGGCCTTCAAGTTCTCAGTGGTATC--AACGCTCCACCTCCAGGGTGATGGTCTTGCCCG 8923982 Query 195116 TCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || | ||||| |||||||| Sbjct 8923983 TCAGGGTATTCAGGAACATTTGCATTT 8924009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109421483779643