Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq40 123 2e-23 seq22 105 4e-18 seq12 104 2e-17 seq148 82.4 5e-11 >seq40 Length=22651954 Score = 123 bits (136), Expect = 2e-23 Identities = 142/189 (75%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 34795 TCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTA 34854 |||| ||||| ||||| || || |||| |||| ||||||||||| ||||||||||| | Sbjct 7366522 TCTGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCA 7366581 Query 34855 GTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT- 34913 | || |||||||| | || | ||||||||||| || || |||||| || || Sbjct 7366582 GACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTC 7366639 Query 34914 -ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 || | |||| || ||| || |||| ||| ||||| || || || || |||||||| || Sbjct 7366640 GATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAA 7366699 Query 34973 GATCTGCAT 34981 ||||||||| Sbjct 7366700 GATCTGCAT 7366708 >seq22 Length=29172479 Score = 105 bits (116), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| ||||||| ||||| ||||| || || || |||| ||| Sbjct 11894363 ACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCCTCC 11894422 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||||| || || |||||||| | || | ||||||||||| Sbjct 11894423 AGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 11894482 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || |||||| || || | | |||| || ||| || |||| ||| |||| | Sbjct 11894483 ATTTTGGCTTTGAC--ATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGCCT 11894540 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || ||||||| ||||||||||| Sbjct 11894541 TGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq12 Length=34595640 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| | ||| ||||| || || || | |||| ||||||||| | ||||||||| Sbjct 22518559 TCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCATCCTCCAGCTGTCTGCCGGCAAAT 22518500 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| || || | |||| || Sbjct 22518499 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATTTTGGCTCTGAC--AT 22518442 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || |||| ||| ||||| || ||||| || || ||| Sbjct 22518441 TCTTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGATCCTCA 22518382 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 22518381 CGAAGATCTGCAT 22518369 >seq148 Length=4887613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 4050354 TCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAG 4050413 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || || || Sbjct 4050414 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--AT 4050471 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| | ||| || || | ||| ||||| || || || || ||||||| Sbjct 4050472 TCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 4050531 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 4050532 CAAAGATCTGCAT 4050544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324616868079912