Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq26 116 4e-21 >seq26 Length=26652979 Score = 116 bits (128), Expect = 4e-21 Identities = 383/587 (65%), Gaps = 9/587 (2%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA-TTAGAAAAGGTTAA 37234 || ||||| ||||| || || || || ||||| || | || ||| || |||||||| | Sbjct 3408069 CAGGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGT-AAGTCAGTTGGAAAAGGTGAG 3408127 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 || ||||||| || ||| || | | | || || | |||||||| || |||||||| Sbjct 3408128 ACCAGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAA 3408187 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAA-TCAG 37353 || ||||| | || ||||| || | | |||| || | || ||| || | || Sbjct 3408188 GATCCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCC-ATAGGTGACCTCTTTGTCCC 3408246 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 || ||| | ||| || ||||| || | || || || || || | Sbjct 3408247 CAAGCCAGCGCAAGGCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGG 3408306 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | || ||||| | | |||||| ||| | | ||||| ||||| || | ||| |||| Sbjct 3408307 TAAACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACTGTACA 3408366 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 ||||||| || |||||||| || || || || || ||||| ||||| | ||||| | || Sbjct 3408367 TTTCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-TA 3408425 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 || ||||| || | ||| | || | | || || || | ||| ||||| || || Sbjct 3408426 ATCTGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCA 3408485 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAA 37652 |||||||||| || |||| | ||||||| ||| || || || | || ||| Sbjct 3408486 GCAAAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAG 3408545 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 | | ||| ||||| || | ||| | | ||| | |||||||| || || Sbjct 3408546 TGCTGAATGTCTTTGGAAAGATCCA---CCTCAGCCGTCCAAAAGGAGGCTTCGGCTTTC 3408602 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||||||||| |||||||| | | | || ||||| || ||||| Sbjct 3408603 TTATACATCTGCCAAATATTGTGGTACTCGATAGGAAAGATCACAAA 3408649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592285488653160