Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq17 158 1e-33 seq41 134 1e-26 seq14 82.4 6e-11 >seq17 Length=29327949 Score = 158 bits (174), Expect = 1e-33 Identities = 328/490 (67%), Gaps = 30/490 (6%) Strand=Plus/Plus Query 29670 CATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTC 29729 |||| | || || ||||| || | ||| || ||||| || | || || | ||||| Sbjct 14730588 CATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTGTTCAGCTGTGAAGTC 14730647 Query 29730 GTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTC 29789 || | | |||| || | | || || || | ||||| |||| || || | || Sbjct 14730648 ATCAATGGTCTCAACTGTTCGAAGGATTCTGAGCTTTGGAAAAGGTC--GGTTCTCGCTG 14730705 Query 29790 GAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG 29849 |||||||| |||||||| || | ||||| |||||| | || || |||| || || || Sbjct 14730706 AAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAAATATGTGCATCTCTCAAAGTATG 14730765 Query 29850 GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTA 29909 ||||| || || || | | || ||||| || || | |||||| ||||| || | || Sbjct 14730766 TACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCGACCATGTAGGTGAGCAGGGCGTT 14730825 Query 29910 GCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 |||||||||||| || || |||||||||| || | |||||| ||||| || Sbjct 14730826 GCTGGCGATGTT---------GCCCAGGCCCATGTCCCTGGAACGCTGGTACAGCTGGCA 14730876 Query 29970 CGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || ||||||||| |||||| ||||| || | || |||||| ||||| || |||| Sbjct 14730877 GGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGGGCGTGGCAGGGAGGCAGCACCAT 14730936 Query 30030 --GAGG---------CC--------CAAGTCTTTGGGGTTCCAGGCGCACACGATGATGC 30070 |||| || | |||||| ||||||| || |||| |||||| | Sbjct 14730937 CAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAGGTTCCAAGCACACATGATGATTC 14730996 Query 30071 GCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCA 30130 ||||| || |||||| | ||||| ||| | || |||||||| ||||| || Sbjct 14730997 TTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTTTCTGCAGCTGGTCCACTTCCT 14731056 Query 30131 TCCCCGAGTA 30140 |||||||| Sbjct 14731057 GACCCGAGTA 14731066 >seq41 Length=20498451 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||||||| || | |||||| ||||| || | ||||||||| ||||| ||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||||||||| || | |||||| ||||| || || |||||||||| | Sbjct 11146837 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACC 11146778 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 11146777 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 11146734 Score = 107 bits (118), Expect = 2e-18 Identities = 127/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || ||||| || |||||||| Sbjct 11142398 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTC 11142339 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 30267 || || | | | || ||| ||| |||||| ||||||| ||| || ||||| Sbjct 11142338 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCA 11142281 Query 30268 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||||| || ||||| || || ||||||| ||||||||| || Sbjct 11142280 TCCCAGATCTTCACGCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 11142231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 |||| |||||||||||||||| |||||| | ||||| || |||||| | ||||| || Sbjct 11145730 CTTTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGT 11145671 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 | | | || |||||||| ||||| ||| |||||||| ||||| Sbjct 11145670 CAATCACTTTCTGCAGCTGGTCCACTCCCTGACCCGAGTAATCTGC 11145625 >seq14 Length=33454342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || || || |||| || || ||||| ||| ||||| |||||| || || Sbjct 1459885 TTGAGTTCTCTACTTAGTACTATATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 1459944 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 1459945 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1459992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408596539465817