Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_018281.1 Length=43581 Score E Sequences producing significant alignments: (Bits) Value seq371 609 6e-170 >seq371 Length=40469 Score = 609 bits (674), Expect = 6e-170 Identities = 918/1301 (71%), Gaps = 49/1301 (4%) Strand=Plus/Minus Query 33851 AATAATGACTAACTTAACAATTTTGACAGGACGTATCACTAAAGATTTAGAACTTAAACA 33910 |||||||| | |||||||| || || ||||| ||||| ||||| |||||||| ||| | Sbjct 4517 AATAATGAAT---TTAACAATCTTAACGGGACGAATCACAAAAGACTTAGAACTAAAAGA 4461 Query 33911 AGCGGGACAAACACAAGTAACTAACTTCTCTATGGCAGTGGACAATCCATTCAAAAAAGA 33970 || || ||||||||||||| ||||| || | || || || || ||||| |||||||| Sbjct 4460 TGCAGGTAAAACACAAGTAACAAACTTTTCATTAGCGGTAGATAACCCATTTAAAAAAGA 4401 Query 33971 TGACACATCATTCTTTGACATCGTAGCGTTTGGCAAAACTGCCCAACTATTAAACGACTA 34030 |||| ||||||||| || || ||||| ||||| ||||| || |||||||||| |||| Sbjct 4400 TGACGTATCATTCTTCGATATTGTAGCTTTTGGTAAAACAGCAGAACTATTAAATAACTA 4341 Query 34031 TTGCGGTAAGGGAAGCAAAGTTTTAATCGAAGGCAACTTGAAACAAGATAGATTCCAAGA 34090 ||||||||| || |||||| || || || ||||| || ||||||||| | ||| | || Sbjct 4340 TTGCGGTAAAGGTAGCAAAATTGGCATTGAGGGCAATTTAAAACAAGATCGTTTCGAGGA 4281 Query 34091 TAAAGAAGGTAACAATCGTTCAGTAGTACGAGTGATTGCAAATAGAATTGAATTCTTAGA 34150 ||||||||||||||| |||||||| || |||| || || ||| | ||||||| ||||| Sbjct 4280 TAAAGAAGGTAACAAACGTTCAGTTGTTAGAGTAATCGCGAATCGTGTTGAATTTTTAGA 4221 Query 34151 TAGCAAAGGTAGTAATCAATCTAACAACCAATCCCCAAAACGAGGGCAAGC--ACCAGCA 34208 || |||| | |||||| ||| || |||| | ||| | | ||||| Sbjct 4220 TACAAAAG------AACAATCT------CAA----CAGAACG--GACAAACTAAACAGCA 4179 Query 34209 GGCA----ATAATCCGTTT------GCTAACGGCACA------GATATAGAAAATTCAGA 34252 || | ||||| ||| |||||||| | ||||| || || || Sbjct 4178 AGCGTCTGAGAATCCTTTTAATAATGCTAACGGTGGACCAATTGATATTCAAGATGACGA 4119 Query 34253 ATTACCGTTCTGATTGGACTGATTAGATGGTAGTAATAAAAAACTACATTACAGAAGATG 34312 |||||||||| | || |||||| |||| ||||||||||||||||| | || ||| Sbjct 4118 TTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATG 4061 Query 34313 ACGGTACAACGACTGTAGTCATCAAAGGAGTAGAACTAGATAACAAAACATCTTTACTTT 34372 | || |||| |||| ||||| | || ||| ||| ||||||| | |||||| Sbjct 4060 ATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACTAC 4001 Query 34373 TAGACAACGGTTACGAAGTAGAA-GCAGATGTAAGAGTTGTAGATCCATTCAAGATTACA 34431 | || ||||| | ||||| ||| ||| ||||| ||| || || |||| ||| || || Sbjct 4000 TTGATAACGGATTAGAAGTTGAATGCA-ATGTAGCAGTCGTTGACCCATACAAAATAACT 3942 Query 34432 GATAAGCAGCGTAGAAAAGTATTTGCTCTCTGT-AACGACATAGAAGCTTACACAGGACA 34490 |||||||| |||||||||||||| ||||| ||| ||||| ||||||||| | ||||| Sbjct 3941 GATAAGCAACGTAGAAAAGTATTCGCTCT-TGTGAACGATATAGAAGCTCATACAGGCAC 3883 Query 34491 ACCACGCGACTATATGAGGTATTTGTTCATGGATTACGTAGAAGTTCTCTATGGCTATGA 34550 |||| || ||||||||| || | ||| || || ||| || || || ||||| || Sbjct 3882 GCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGA 3823 Query 34551 AAAACGTCTCTCATTGAGTGATTGCACAAGAGAACAAGCTANNNNNNNNNNNNNNNNNNN 34610 | || | ||| | |||||| | || || || | Sbjct 3822 TGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGC 3763 Query 34611 TCTCGACTGGGTGTTTCACAACGATATACCACTTAATTATAAGACGAGTGACTTACTCAA 34670 | || ||| | || | ||| | || || || | ||||| || ||||| || |||| Sbjct 3762 AATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAA 3703 Query 34671 AAATGATAAAGCATTTCTATATTGGTCAACAGTCAATCGTAACTGTGTTATCTGTGGTAA 34730 ||||| | | | ||| |||| | | || |||| | || || ||||||||||| || Sbjct 3702 GAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAA 3643 Query 34731 ACCACATTCCGACTTAGCACATAGATTTGCGGTAGGACGTGGCAGAGATAGAACGAAGAT 34790 | || | || |||||||| || ||||| ||||| | | ||| ||||| Sbjct 3642 GC---ATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGAT 3586 Query 34791 TAATCATTTCGGAAATCAAGTGTTAGCTCTATGTAGATCTCATCACAACGAACAGCATCA 34850 | ||||| || |||| |||| |||||| | |||||| || || || || | Sbjct 3585 AGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGA 3526 Query 34851 AATAGGCATGGACGCATTTAATAACAAATATCACTTAACAGACAGTTGGGTGTCTGTGGA 34910 || |||||||| || ||||| || ||||| ||| | | |||||| || || Sbjct 3525 CATGGGCATGGATAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGA 3466 Query 34911 TGAACGACTAAACAAAATGCTGAAAGGAGTGAGAGATGATTGAAAGAACAACCTAACTAT 34970 || ||||||||||||||||||||||||||| || ||| || ||||||||||||||| Sbjct 3465 CGAGAGACTAAACAAAATGCTGAAAGGAGTGAAAGTGGAT-GACGGAACAACCTAACTAT 3407 Query 34971 TACTCAATCATTCCAGCACACGTTAGATATGATAAAGAGTTAAAACCAATGGAAGTTATT 35030 || || || |||||||| || ||||||||||| ||| ||||||||||||||| ||||| Sbjct 3406 TATTCGATAATTCCAGCTCATGTTAGATATGACGTAGACTTAAAACCAATGGAAATTATT 3347 Query 35031 ATGTATGGCGAATTAACTGCTTTGTCCAATAAATACGGATATTCATATGCTAGTAATAAC 35090 ||||| || ||| | |||||||| || |||||||| ||||||||||| ||| | |||| Sbjct 3346 ATGTACGGTGAACTTACTGCTTTATCAAATAAATATGGATATTCATACGCTGGAAATAGT 3287 Query 35091 TACTTTGCAGAACTATATAACGTTCATaaaaaaaCTGTATC 35131 |||||||| | |||||||||| ||||||||||| || || Sbjct 3286 TACTTTGCTAACTTATATAACGTCCATAAAAAAACAGTGTC 3246 Score = 205 bits (226), Expect = 3e-48 Identities = 465/685 (68%), Gaps = 17/685 (2%) Strand=Plus/Minus Query 36752 TGCTATAGATCAAATTAAGAAATGTAATTCTTTAAAAATTGAGGACCA-AGCACAAATGA 36810 ||||||||||||||| |||| || | | ||| ||| | ||| | ||||||| | Sbjct 1629 TGCTATAGATCAAATACTTAAAT-TAGGTAT--AAACATTAATGACGATAGCACAACA-A 1574 Query 36811 CACCACAAGACGTTAGAGAAGTCGCATCTCAAAAAACAGAAAAACCTCATGTAATATTTA 36870 ||||||||||| |||||| | || | | | || ||||| || || ||||||| Sbjct 1573 CACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGACAAACCACAAGTTATATTTA 1514 Query 36871 TTGATTACCTTACACTCATGCAATCAGATGTACCTCAACGTGATAGACGATTAGAAGTTG 36930 ||||||||||| | | ||| || ||||| || | ||||||||| | | ||||| Sbjct 1513 TTGATTACCTTCAATTAATGGAAACAGATA---CTAATGTTGATAGACGCGTTGCAGTTG 1457 Query 36931 AAAAGATTTCTCGTGATTTAAAAATTATAGCTAAAGAAACAGGTTGTATCATTATCGCAC 36990 ||||||| || || || || ||||| ||||| || |||||||| || || | | | Sbjct 1456 AAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGGAGCAATTATAGTAGTTC 1397 Query 36991 TATCTCAATTAAGTAGAGGCGTAGAAAGTCGTAGTGATAAACGTCCGATGATGTCTGATT 37050 | |||||||| | | | || || ||| | | ||||||||||||||| | || || Sbjct 1396 TTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACGTCCGATGTTATCAGACA 1337 Query 37051 TAAGAGAAGCAGGAGGAATTGAGCAAGACGCGAATATGATTTTCTTCTTATACCGTGATG 37110 | | ||| |||| |||||||| |||||| | |||| | | || || | |||| Sbjct 1336 TGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGATGATGTTGTATAGAGATG 1277 Query 37111 ATTATTACGACCAAGATCAACAAGACAATATTACAGGTAAATCAGAAATTGAATTCATTA 37170 |||| ||||| |||||| || ||| | || | |||||||| |||||| | || Sbjct 1276 ATTACTACGAACAAGATGAAGCAGATGA-AT--CTGGTAAATCTATCGTTGAATGTAATA 1220 Query 37171 TTTCTAAAAATAAAGATGGAGAAACAGGGGTTGCACATCTTGATTTTTACAAGAAAACGC 37230 | | || || |||||||| ||||| || ||| | |||| |||||||||||||| | Sbjct 1219 TAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGAATTTTACAAGAAAACAC 1160 Query 37231 AGAGGTTTTACGGATGAAGGTTTATGAATATCAACAACTTTTAGGCTTTATGTATCGAGA 37290 ||||||||| | |||| || ||| |||||| || |||| | | | || |||| Sbjct 1159 AGAGGTTTTTCACATGAGTGTAGCACAATTTCAACAGCTACTAGGATATCTCTACAGAGA 1100 Query 37291 ACACTACAAAGAAGATTCAATCATATCTA--AAACATTAATCGAATCTGGGTGGGCAGTT 37348 | || ||||| ||| | |||| || | ||| ||| | |||| || ||||| Sbjct 1099 AACATATAAAGACGATACGGTCAT-TCAAGCTAAC-TTACTTGAATTAGGTTGGGCGACA 1042 Query 37349 AAAAGGCTGCTTGATACTGGAGCTATTAA-ACCTTTTGACGATTATGAAGAAGTGAAAGA 37407 | || |||||| || || || | ||| ||| | ||||| || || || ||||| Sbjct 1041 GAGAGATTGCTTGCTAAAGG-GCAAATAACACCATATGACGCATACGACGATAACAAAGA 983 Query 37408 GTTAATCATGAATGAAACGAAGTGG 37432 || || | ||||| | | ||||| Sbjct 982 ATTGATATTCAATGAGATGGAGTGG 958 Score = 185 bits (204), Expect = 2e-42 Identities = 196/259 (76%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 24925 TAAAATGGCAGAAAAATGGAATGGAGTACCAGTGCGTTACGATTTGTTGCCAATTGGAAC 24984 ||||||| | |||||||||||||| || ||||| || |||| ||| ||||| ||||| Sbjct 17608 TAAAATGACTGAAAAATGGAATGGTGTCCCAGTAAAATATGATTGGTTACCAATAGGAAC 17549 Query 24985 ACGTCGGAGTGGAGAAGCATTACACACTAAAAATGGAAAACCTAGTTTTGCAGTTATTCA 25044 ||| | ||||| || |||| | || ||| |||||| |||||| || ||| Sbjct 17548 TCGTAGAAGTGGGCAAAAATTA------ACAAGTGGTAAACCTGTTTTTGCCGTCGCTCA 17495 Query 25045 TGATACCGGGAATCCAAATACTACTGCACAAGATAATGTGAATTATTATAAAAATACGTA 25104 ||||| || || || ||||| ||||||||||||||||| |||||||||||||||| || Sbjct 17494 CGATACTGGAAACCCGAATACAACTGCACAAGATAATGTTAATTATTATAAAAATAGTTA 17435 Query 25105 TAATATTGCTTGGAGCATGGTAGCAAGTGCTCATATTTTTGTAGATGATAAAGAAGCAAT 25164 ||| |||| |||| | || ||| ||| ||||| ||||| |||||||||||| || Sbjct 17434 TAACATTGATTGGTCACTTGTTGCATCTGCACATATATTTGTTGATGATAAAGAATGTAT 17375 Query 25165 TATATGTATTCCGGTTACA 25183 | | |||||||| || ||| Sbjct 17374 TGTGTGTATTCCAGTGACA 17356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139330602552814