Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq16 149 5e-31 seq148 114 1e-20 seq35 111 1e-19 seq117 82.4 6e-11 >seq16 Length=31725842 Score = 149 bits (164), Expect = 5e-31 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | ||||||||| || || ||||| || |||||||| | | ||| | |||| Sbjct 21647040 AACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATCT 21647099 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||||||| ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 21647100 TCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 21647159 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || ||||||| |||||| |||||| || | ||| || || || |||| || Sbjct 21647160 TGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTC 21647219 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | |||||||||||| |||||||| Sbjct 21647220 TTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq148 Length=4887613 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || ||||||||||| | | ||| | | |||| || | ||| Sbjct 4050570 TGCAGAGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCATCTTCAAGCTGC 4050629 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| || |||||||||||||| || || || Sbjct 4050630 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTG 4050689 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || ||| | ||||||||| || |||| || ||||| || Sbjct 4050690 GCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCAGTC 4050749 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 4050750 AGGGTCTTCACAAAGATCTGCAT 4050772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || |||||||| || | | ||| | | |||| |||| ||| Sbjct 4050342 TGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 4050401 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || |||||||||||||| || || || Sbjct 4050402 TTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 4050461 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | || ||| | ||||| || || |||| || ||||| || Sbjct 4050462 GCCTTCACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 4050521 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 4050522 AGGGTCTTCACAAAGATCTGCAT 4050544 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | || | || | || || ||||| ||||| || || ||||| || | Sbjct 4050772 TTCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAG 4050831 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | || || |||||||| || | | ||| || || || | Sbjct 4050832 AAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 4050891 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | |||||||||||||| || || || || ||| | || | || ||| | ||||| Sbjct 4050892 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCA 4050951 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| || ||||| || | || || || || || ||||| Sbjct 4050952 CTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 4051000 >seq35 Length=22943593 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||| || || ||||| || |||||||| | | || |||| |||| ||| Sbjct 21587379 ATGAAGGGGGGACTCCTTTTGAATGTTGTAATCAGACAAAGCATGTCCATCTTCCACTTG 21587320 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| |||||||||| || ||||| || ||||| ||||| ||||| || || || Sbjct 21587319 CTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 21587260 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | |||| |||||| ||| || || ||| || |||||||||| || || | | Sbjct 21587259 GGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTTGC 21587200 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||||| ||||| || Sbjct 21587199 AAGAGTTTTTACAAAAATCTGTAT 21587176 >seq117 Length=6347111 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| || | | ||| | |||| |||| ||| Sbjct 1554184 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCTTCCAGCTGC 1554125 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||| ||| || | | ||| || || || || |||||||||||||| || || || Sbjct 1554124 TTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTG 1554065 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || ||| | ||||||||| ||||||| || ||||| || Sbjct 1554064 GCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTC 1554005 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || | || || ||||| Sbjct 1554004 AGGGTCTTCATGAAGATTTGCAT 1553982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396257975439753