Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq16 122 7e-23 seq39 89.7 4e-13 seq126 84.2 2e-11 >seq16 Length=31725842 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||||||||| | | | | | || Sbjct 21647039 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATC 21647098 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||| ||||| ||||| | || ||||| | |||| || ||||| || Sbjct 21647099 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 21647158 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||||||| | | || ||||| | || ||||| | ||| || || Sbjct 21647159 CTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 21647218 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | |||||||||||||||||||||| || Sbjct 21647219 CTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTTG 21647255 >seq39 Length=21454635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||||||||| | | | || | || Sbjct 17272291 CAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 17272232 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||| ||||| ||||| | || ||||| |||| || ||||| || Sbjct 17272231 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATC 17272172 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| ||||||| | | || | | || ||||| | ||| || || Sbjct 17272171 CTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGT 17272112 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || | || |||||||| |||||||||||| || Sbjct 17272111 CTTCTCCATAAAGGTTTTTACGAAAATCTGCATCTTG 17272075 >seq126 Length=6421402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||| |||||||| || | | | || | | |||| |||||||| ||||| Sbjct 2409847 CTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAA 2409906 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | || ||||| | |||| || ||||| || ||||| ||||||| Sbjct 2409907 GATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATT 2409966 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || ||||| | || |||| | || || || || || || | |||||||| Sbjct 2409967 TTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTAC 2410026 Query 48755 AAAAATCTGCATCGTG 48770 |||||||||||| || Sbjct 2410027 GAAAATCTGCATCTTG 2410042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380917966118967