Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq26 219 8e-52 seq172 172 1e-37 seq179 136 7e-27 seq34 102 2e-16 seq48 100 5e-16 seq133 91.5 3e-13 seq88 91.5 3e-13 seq136 86.0 1e-11 seq1 86.0 1e-11 >seq26 Length=26652979 Score = 219 bits (242), Expect = 8e-52 Identities = 564/847 (67%), Gaps = 24/847 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || | ||||| |||||||||| ||| ||||| || |||| | || | ||| Sbjct 3407778 CTGATATTCGTCTACTCTCTTCTCAAAGAGGTTCGTCTTTCCTTCCAGAAAAATATGCTC 3407837 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||||||| ||| || || | | | ||| | ||| ||| | |||||||| Sbjct 3407838 CATGAAGTCGAATGGATTTTCCACATGAAAAACCTCCTTGTTGAACCC--CAGTTCCAGC 3407895 Query 47957 AGGTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | || || ||| | |||||||| | ||| | || |||||| || ||| Sbjct 3407896 ATAAGCCTGTCAGCCACGAATTCGATGTACTGCTTCATTAAATTGCAGTTCATCCCGATG 3407955 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| ||||| |||| ||||| ||||||| ||| ||| | ||| | | Sbjct 3407956 AGCT-CACAGGCAAGGCCTCGGTGAGGAACTCCTGCTCGATCCTGAAGGCATTGATAATG 3408014 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCA-GGTGCTTGGCATAGAGCATGCA 48132 |||| ||| || | ||||||||||||||| || || |||||||| | | || ||| Sbjct 3408015 ATCTCCTTCACTCTCTACTCTGAGGGTTTGT-GCACAAGGTGCTTGA---ACATCAGGCA 3408070 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||||||| ||||| | ||| | || |||||| ||| |||||| Sbjct 3408071 GGCAAAGTCACAGTGCAAGCCCTCGTCTCTGCTAGTAAGTCAGTTGGAAAAGGTGAGACC 3408130 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||| | ||| | |||||| |||| || | ||| ||||| || || |||||||| Sbjct 3408131 AGGCATTATTCCCTGTTTCTTGAGCAAGAAGATCGACGCAAAAGAACCGGAAAAGAAGAT 3408190 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || |||| || || || || | | ||||| | | | | ||||| | Sbjct 3408191 CCCTTCCATGGCGGCAAAGGCAAGCACACGTTCTCCATAGGTGACCTCTTTGTCCCCAAG 3408250 Query 48313 CCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| | ||| |||||||| ||||||||||| ||||| ||||| ||||| |||| | Sbjct 3408251 CCAGCGCAAG-GCCCAGTCCGCCTTCTTCTTCATGCAGGGCATGGTCTCGATGGTGGTAA 3408309 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACA 48428 | || || | || | ||| ||| || || | | || || | ||||| Sbjct 3408310 ACAGAAACTCTCTTTCTTTGGAGTCTTTAACGTAAGTGTCAATAAGGAGACT---GTACA 3408366 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 | ||||| || | ||| || || || || ||||| || ||||| | ||| || | Sbjct 3408367 TTTCAGAATGGATATTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAA 3408426 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| |||||| | |||| ||||| ||||||||| |||| ||| ||||| |||| Sbjct 3408427 TCTGAACTTCTTGGCTAAATCGCTCCACCAGATTCTCGTTGAGTATGCCATCGCTGGCAG 3408486 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 ||||||| | ||||||||| || |||| | ||| | | || || | |||| Sbjct 3408487 CAAAGAAAGAGAGGACATGTGAAATAAAATATCTCTCCCCAGGCTTTAGTGCTTCCCAGT 3408546 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 ||| | ||||||| || ||||| || || ||||| ||||| || ||||| | Sbjct 3408547 GCTGAATGTCTTTGGAAAGATCCACCTCAGCC---GTCCAAAAGGAGGCTTCGGCTTTCT 3408603 Query 48669 TGTACAT 48675 | ||||| Sbjct 3408604 TATACAT 3408610 >seq172 Length=2823729 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || || ||| || ||||| ||||||||| |||||||| || Sbjct 404241 AGCAGCTGGCAGCCGTTGCTCACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACTTGC 404182 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | ||||| |||||| || ||||| || | || || |||||| Sbjct 404181 TCCCGGAGCAGCCCGGCGGTGCTGGACAACCCCGCGTTCTCGGCTTTCAGGGTCTTCACC 404122 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 404121 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 404062 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 |||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 404061 CGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 404002 Query 241625 GAC 241627 ||| Sbjct 404001 GAC 403999 >seq179 Length=2494289 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||||||||| || |||||||| || ||||| | | |||||| | ||| Sbjct 1573232 AGCACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCGGTGGACGCCAGC 1573291 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||| || ||||||||||| |||| |||||| || || Sbjct 1573292 TCGGTGTTCTGGCTCTTGAGCGTCTTGACCTTCTCCTCCAGACGCGAGATGCGCTCGAGC 1573351 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||||| Sbjct 1573352 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCTTG 1573411 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || || ||||| ||||||||||| || ||| Sbjct 1573412 ATACGCTCCTGCGTGTCCATGTCGATGGGCGAC 1573444 >seq34 Length=23970518 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | |||||||||| ||||||||||| ||| || ||||||| || |||| || Sbjct 19377073 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCTCTCTTCTTC 19377132 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || ||||| || || || |||||||| | || ||||| |||||||| || Sbjct 19377133 AGCCAGAAGATGGCCGCAAAGGACCCCGAGAAGAACACTCCTTCCACGGCCGCGAAGGC 19377191 >seq48 Length=20532749 Score = 100 bits (110), Expect = 5e-16 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||||||||| || | ||| || || || || | ||||| ||||||| Sbjct 14858390 CAGGCAGGCAAATTCACAGTGAAATCCCTCATCTCTGCTGA----------GGAGAAGGT 14858341 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||| || ||||||| || |||| || ||||||||||| ||| | || || || | ||| Sbjct 14858340 GAGGCCTGGCATGAGGCCTCTCTTCTTCAGCCAGAAAATGGCCACAAAGGACCCTGTGAA 14858281 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| | || |||||||| ||||| || |||||| | ||||| || || |||| Sbjct 14858280 GAACACTCCTTCCACTGCTGCGAAGGCCACCTCCCTCTCCCTGAAAGCAGACTTTCTGTC 14858221 Query 48307 TGAGATCCAG-GAAAGCGCCCAGTCTGCCTTCTTCTT 48342 || ||||| | ||| ||||||||||| || ||||| Sbjct 14858220 TGCTATCCACCGCAAG-GCCCAGTCTGCTTTTTTCTT 14858185 >seq133 Length=5132600 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||||||||| ||||||||||| || || | ||||| || | | | ||| |||| ||| Sbjct 1539285 CTTCACTTTTTCCTCCAGCCGGGCAATCCTCTCCAGCTTCCTCTTCCTGCACTTGGAGGC 1539226 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | |||||||| | | ||| | || ||||||||||| |||||| ||||||||| Sbjct 1539225 AGCGATGCGGTTCCTCATGCGCTTCCTCTCGGCCTTGATGCGCTCCTGGGACTCCATGTC 1539166 Query 241618 GATCGGAGAC 241627 ||| || ||| Sbjct 1539165 GATGGGGGAC 1539156 >seq88 Length=9715273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 5552720 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGG 5552661 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 5552660 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTCTGTCTG 5552602 Query 213647 GGAC 213650 ||| Sbjct 5552601 AGAC 5552598 >seq136 Length=5168023 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||| || || ||||||| ||| ||| |||||||| | |||| | ||| Sbjct 4986660 TCGTCTCTGCTAATAAGTTCGTTGGAAAAGGTGAGGCCAGGCATTAGTCCCCGTTTCTTG 4986719 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| |||| ||| ||||| || || |||||||| || ||||| || || || ||| Sbjct 4986720 AGCCAGAAGATTGACGCAAAAGAACCGGAAAAGAAGATCCCTTCCACGGCAGCAAAGGCG 4986779 >seq1 Length=78885850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGAT 213541 |||||| | | |||| ||| ||||| || ||||| | | || ||||| | || Sbjct 12367934 CAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTGGTATACTCTACTAT 12367993 Query 213542 CTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTT 213601 || |||||||| ||||||||| ||| || ||||||||||| ||||| ||| || Sbjct 12367994 TTCTGTGCACAGATTGCTGCATTTGATTGTTCCCAGGTTCTGTTGGTTGCTCTTCTGATT 12368053 Query 213602 GGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 ||||| |||||||||||||| |||| || |||||| Sbjct 12368054 ATAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTCTCT 12368093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931483556847360