Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq26 170 4e-37 seq136 114 2e-20 seq34 105 1e-17 >seq26 Length=26652979 Score = 170 bits (188), Expect = 4e-37 Identities = 322/467 (69%), Gaps = 15/467 (3%) Strand=Plus/Minus Query 25606 TTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAA 25665 |||||||| ||| ||||| ||| | |||||||||||| ||| |||| | | ||| Sbjct 3408493 TTCTTTGCTGCCAGCGATGGCATACTCAACGAGAATCTGGTGGAGCGATTTAGCCAAGAA 3408434 Query 25666 GTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGC 25723 || ||| ||| || ||| |||||||| || ||||| || ||||| |||||| | | Sbjct 3408433 GTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATATCC 3408376 Query 25724 ACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAG 25780 | ||||| |||| || || || || || ||| ||| |||| | || |||| Sbjct 3408375 ATTCTGAAATGTA---CAGTCTCCTTATTGACACTTACGTTAAAGACTCCAAAGAAAGAG 3408319 Query 25781 ATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCA 25840 | |||||| |||||||| ||| ||| |||| |||| ||||||| |||||| Sbjct 3408318 AGTTTCTGTTTACCACCATCGAGACCATGCCCTGCATGAAGAAGAAGGCGGACTGGGCCT 3408259 Query 25841 TGAAGTGGATCAACAGCCAGAGCGCT-ACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCT 25899 || ||| | | || || | | || | ||| || || || | |||||||| || Sbjct 3408258 TGCGCTGGCTTGGG-GACAAAGAGGTCACCTATGGAGAACGTGTGCTTGCCTTTGCCGCC 3408200 Query 25900 GTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGG 25959 |||| || ||||| || |||||| |||||| | ||||||| ||||||| | |||| Sbjct 3408199 ATGGAAGGGATCTTCTTTTCCGGTTCTTTTGCGTCGATCTTCTTGCTCAAGAAACAGGGA 3408140 Query 25960 ACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGA 26019 | ||||| || || |||||||||| || | ||||| |||||||| | ||| | Sbjct 3408139 ATAATGCCTGGTCTCACCTTTTCCAACTGACTTACTAGCAGAGACGAGGGCTTGCACTGT 3408080 Query 26020 GATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 || |||||||||||| | | || | ||| | | |||||||| || Sbjct 3408079 GACTTTGCCTGCCTGATGTTCAAG---CACCTTGTGCACAAACCCTC 3408036 >seq136 Length=5168023 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||||||||| ||||| || ||||| || |||||| |||||| Sbjct 4986793 GGAGAGCGTGTGGTCGCCTTTGCTGCCGTGGAAGGGATCTTCTTTTCCGGTTCTTTTGCG 4986734 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 | ||||||||||||||| | | |||||| | |||| || || |||||||||||| || Sbjct 4986733 TCAATCTTCTGGCTCAAGAA-ACGGGGACTAATGCCTGGCCTCACCTTTTCCAACGAACT 4986675 Query 25992 CATCAGCAGGGACGAGG 26008 || ||||| ||||||| Sbjct 4986674 TATTAGCAGAGACGAGG 4986658 >seq34 Length=23970518 Score = 105 bits (116), Expect = 1e-17 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| || |||| ||||| || || ||||| || | || ||| || || |||||| Sbjct 19377206 GGGGAGAGGGTGGTGGCCTTCGCGGCCGTGGAAGGAGTGTTCTTCTCGGGGTCCTTTGCG 19377147 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||| || || ||| |||||||||||| Sbjct 19377146 GCCATCTTCTGGCTGAAGAAGAGAGGCCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 19377087 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 19377086 ATCAGCAGAGACGAGG 19377071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928795698941760