Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_019914.1 Length=40071 Score E Sequences producing significant alignments: (Bits) Value seq371 120 8e-23 >seq371 Length=40469 Score = 120 bits (132), Expect = 8e-23 Identities = 201/285 (71%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 38168 CGAATAACGATTAGG---AGTGAATGTAAA-TGACAGAATATTGGAATGGCGTTCCTGTT 38223 ||||||| |||||| || |||||||| |||| ||| | |||||||| || || || Sbjct 17632 CGAATAA--ATTAGGTGGAGGTAATGTAAAATGACTGAAAAATGGAATGGTGTCCCAGTA 17575 Query 38224 AGATATGATTTATTACCGATAGGCACAAGACGAAACGGGGAACGGTTACACACTAAAGAC 38283 | |||||||| ||||| ||||| || | ||| ||| || ||| || ||| Sbjct 17574 AAATATGATTGGTTACCAATAGGAACTCGTAGAAGTGGGCAAAAATTA---AC--AAGT- 17521 Query 38284 GGTAAACCTAAATTTGCAGTAATACATGACACAGGGAATTTAGACTCAACTGCACAACAA 38343 ||||||||| ||||| || || || || || || | ||||||||||| | Sbjct 17520 GGTAAACCTGTTTTTGCCGTCGCTCACGATACTGGAAACCCGAATACAACTGCACAAGAT 17461 Query 38344 AATGTAAACTGGTACAAAAATACTTATAATATTTCTTGGTCGCAAGTCGCATCGGCTCAC 38403 ||||| || | || ||||||| |||||| ||| |||||| | || ||||| || || Sbjct 17460 AATGTTAATTATTATAAAAATAGTTATAACATTGATTGGTCACTTGTTGCATCTGCACAT 17401 Query 38404 ATCTTTGTTGACGATAAAGAGGCAATCATTTGTATTCCAGTAACA 38448 || |||||||| |||||||| || | ||||||||||| ||| Sbjct 17400 ATATTTGTTGATGATAAAGAATGTATTGTGTGTATTCCAGTGACA 17356 Score = 86.0 bits (94), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 26183 TGGGTATCACAAGGTTTTaaaaaaaTGGGGCAAGCATTTAATGAATGGGCGCAATCAGTT 26242 |||| | || |||| ||| |||| |||||| || ||||| || | ||||| | |||||| Sbjct 30337 TGGGCAGCAAAAGGCTTTGAAAATATGGGGAAATCATTTGATAACTGGGCTAATTCAGTT 30278 Query 26243 GAAGGGCAAAATGCGATCAAGTCATTTATTGAATATACTAAACAGAACTTACCATTAATA 26302 |||| || || || || ||| |||||||||| || || || |||||| | || Sbjct 30277 CAAGGATCTAAAGCAATAAATGGTTTTGTTGAATATACAAAGCAAAATTTACCAATTGTA 30218 Query 26303 GGTCAGATATTTGGC 26317 || |||||||||||| Sbjct 30217 GGACAGATATTTGGC 30203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128099166616834