Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_019921.1 Length=42461 Score E Sequences producing significant alignments: (Bits) Value seq371 316 6e-82 >seq371 Length=40469 Score = 316 bits (350), Expect = 6e-82 Identities = 537/769 (70%), Gaps = 17/769 (2%) Strand=Plus/Minus Query 10147 ACAGAATAGACAGCAA---TCAAATAATCCATTTGCTAATGCTAATGGT---CCTATAGA 10200 ||| | || ||||||| || | ||||| ||| ||||||||| ||| || || || Sbjct 4193 ACAAACTAAACAGCAAGCGTCTGAGAATCCTTTTAATAATGCTAACGGTGGACCAATTGA 4134 Query 10201 AATCTCTGACGATGATTTACCTTTCTAGGACGTGATTAAATGGCTCAAATCAAAAACTAT 10260 || || || |||||||| ||||| | ||||||| ||||| ||| |||||||| Sbjct 4133 TATTCAAGATGACGATTTACCGTTCTAAGGTGTGATTATATGGCGGTAATAAAAAACTAC 4074 Query 10261 ATCACTCAAGATGACGGCACAACAACAGTCGTTATCGAGGGTGCCGAGCTAGGAGACAAA 10320 ||| ||| |||| ||||||| ||| | ||| || ||||||| || ||||| Sbjct 4073 ATCCAACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAA 4014 Query 10321 GAAACATTATTACTTGATAACGGCTACGAAGTCGAATGTGATTTGCGAATCGAAGACCCA 10380 || ||| ||||||||||||| | ||||| ||||| || | | ||| |||||| Sbjct 4013 GACTTTTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCA 3954 Query 10381 TTCAAAATAACAGACAAGCAACGAAGAAAAATATTTGCGCTCTGT-AACGACATAGAGAG 10439 | ||||||||| || |||||||| |||||| |||| || || ||| ||||| ||||| || Sbjct 3953 TACAAAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCT-TGTGAACGATATAGA-AG 3896 Query 10440 C-CACACAGGCCAACCACGTGACTATATGAGGTATTTGTTCCAAGAATATGTAACGGTTC 10498 | || |||||| |||| || ||||||||| || | ||||||||||||||| || | Sbjct 3895 CTCATACAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGC 3836 Query 10499 TGTATGACTATGACAAGAGTATTTCGTTAAGTGACTGTACACGGATGCAAGCGAATCAAA 10558 | || | ||| || || | || || | ||| ||| | ||| || | ||||| Sbjct 3835 TATACGGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAA 3776 Query 10559 TTATCGAGGTAACACTCGATTGGATATTTCACAACGACATACCGCTTAGTTATAAAACAA 10618 |||| || ||| || | || |||||||| | ||| |||| ||||| || |||||||||| Sbjct 3775 TTATAGATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAA 3716 Query 10619 GCGACTTGCTGAAACAAGATAAATCATTCTTATACTGGTCAACTGTCAACCGCAACTGTG 10678 | || | | || | || | | | || |||||| | | ||| |||| | || || | Sbjct 3715 GTGATCTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCG 3656 Query 10679 TAATATGCGGAAAGCCTCACGCAGACCTAGCACATTATGAAGCAGTCGGTAGAGGTATGA 10738 | || || || ||| || ||||| |||||||||||| ||||||| ||| | || | Sbjct 3655 TTATCTGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCA 3599 Query 10739 ACAGAAACAAGATGAATCACTACGACAAACATGTATTAGCGTTATGTCGCGAACATCACA 10798 ||||| |||||| | || | |||| | ||||||| ||||| | ||||| | Sbjct 3598 ACAGACGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATA 3539 Query 10799 ACGAGCAACATGCGATTGG--TGTTAAGTCATTTGATGATAAATATCAATTGCATGACTC 10856 | |||||||| | || || || ||| || || | || ||||| || | | || Sbjct 3538 AAGAGCAACACGACATGGGCATGGATAGT--TTCAATAAGAAGTATCATTTAGAAAATTC 3481 Query 10857 GTGGATAAAAGTTGATGAGAGGCTCAATAAAATGCTGAAAGGAGAGAAA 10905 ||| | | ||||| ||||| || || |||||||||||||||| |||| Sbjct 3480 ATGGGTGGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Score = 174 bits (192), Expect = 4e-39 Identities = 261/371 (70%), Gaps = 6/371 (2%) Strand=Plus/Minus Query 29892 TATCATTGGTAAAATTAAAGATCATATCGGCGGTATGGTAGATGCTATTAAAAAAGGACT 29951 ||| |||| ||||||||| ||| || || ||||||||| | |||| ||||| Sbjct 28627 TATTATTGACAAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACT 28568 Query 29952 TAATAAATTAATTGAAGGCTTAAACTGGGTCGGTGGTAAGTTAGGTATGGATGAAATACC 30011 || ||| | || ||||| | |||||||| | || || | || ||||| || |||| Sbjct 28567 AAACAAACTTATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACC 28508 Query 30012 TAG------GTTACACACTGGTACAGAGCACACACATACTACTACAAGATTAGTTAAGAA 30065 || ||||||||| ||||| || || || |||| ||||| | | ||||| || Sbjct 28507 TAAAATCAAGTTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAA 28448 Query 30066 CGGTAAGATTGCACGTGATACATTCGCTACAGTTGGGGATAAAGGACGTGGAAATGGTCC 30125 |||||||||||| || |||||||| || || || |||| ||| || |||||||| Sbjct 28447 CGGTAAGATTGCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCC 28388 Query 30126 AAATGGTTTTAGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCTAA 30185 |||||| || ||||||||||| | || || |||||| || |||||||||||| Sbjct 28387 CGGTGGTTTCCGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAA 28328 Query 30186 TACAGACACTACTGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGTGCACAAACTTA 30245 | ||| || || || ||| | || |||| || | || ||||| || || || || | Sbjct 28327 CAGAGATACAACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACA 28268 Query 30246 TTCAATGTTAA 30256 | ||||||||| Sbjct 28267 TGCAATGTTAA 28257 Score = 163 bits (180), Expect = 8e-36 Identities = 285/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 13356 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 13415 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 13416 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGTACTAACTATGATC 13469 | ||||| || ||| | || |||||| | |||| || ||||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 13470 GTATCGAAATACAACCGAAATTTNNNNNNNNNNNNNNNNNNGGGAAACAAAGACCGATTA 13529 ||||| |||||||||| || | || |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 13530 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 13589 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 13590 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 13649 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 13650 ATGTGAATTTAACGTGGATATGTAAAGCACCTAAATACACAGGTCAAGAATGGATGGTAT 13709 |||| || | || |||||||||||||||||||| ||||||||| |||| ||| | | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 13710 ATGAGGACTTAGTGAAAGTCAGACGTAAAAGAAAAAGAGAAATGAAGTGATTTAATGCAA 13769 |||| || || || || ||||| || | || | || | || |||||| ||| || Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135746782539054