Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq82 228 9e-55 seq2 159 4e-34 >seq82 Length=11338420 Score = 228 bits (252), Expect = 9e-55 Identities = 646/984 (66%), Gaps = 9/984 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || || || || || | ||||| ||||| || Sbjct 3970551 CAGATGCTCATCCAAACACTGGATGGCAAAGACATCGACATCAACATCGAACTTATTGGC 3970492 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || ||| ||| || | ||| || | || || || || || Sbjct 3970491 AAAAAAGTGGTGT---TTGCGTAACATCGAGGTTAAGTCACCAGCTCCAAAAACACACAC 3970435 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 | || | || || || | || || || || | || || || || |||||||| Sbjct 3970434 GCTGCGCACATGGACACCATCACAGGGTGGATAGGGTGCGCCCTTGTTAACATCACCTTC 3970375 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | ||||||||||| || ||| || |||| Sbjct 3970374 AAAGTATTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCAGACAGGTCATACTTGTG 3970315 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| ||| | | || || | |||| || | || | ||||||||| || | || Sbjct 3970314 GCTCAAGGGTAGAGAGCCCGGGGCCTCGGGGATCCTTTGGATGGTGGCCCAGAGATACTC 3970255 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTCCCGCA 160410 || |||||||||||||| || | ||| |||||||||| ||| | | | | | Sbjct 3970254 ATCTGGGCTGTACGTGTCTTTCGCCCACTCCATGAACTTCTGGATGTCTTCATTTTCT-A 3970196 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || || | || ||||| || || ||||| ||||| | ||| Sbjct 3970195 GCACGTAGCCCACATACTCCCTACTGACCACAAAATAGGCACTGCCTGAGAAAAGAGGTG 3970136 Query 160471 TGGGTATAGGCGGC-GTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| ||| |||| |||| | | ||||| | | ||| | | | Sbjct 3970135 TTTTGAGAGGAGGCTGTGT-TTTGGGGTTCCTGGTGTCCATTAGCCTTCCATCGATGATT 3970077 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | | || |||||||| | || || | |||||| || || || || || Sbjct 3970076 TCATAATGTTTTTTCCACCTTTCTGCTTTATGAGATGGCATCTTCTCTGTTTCCAGGTTG 3970017 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || |||| || ||| || |||| | |||| || || ||||| || || | ||||| Sbjct 3970016 TTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 3969957 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || | || || | || |||| ||||||||| | | |||| || |||||| || Sbjct 3969956 TCCATCCCACAAAGATTGATCAAGTACTTCCACTCTGTGCTCCTTCTGTAGAGGTCCTTC 3969897 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | || ||||| || || ||||| ||||| || || || |||| || | | Sbjct 3969896 ATGCAGTTGAGGTCAGCCTGAACTCGACTCCACGAAGCATAGACCACACTCTCCAGCTGA 3969837 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA-T 160828 |||||||||||||| || |||||| || | || ||| ||| | ||| | || | Sbjct 3969836 CTGGCCACAAAGACATTCCTGAAACAGGATGCAATGCCCTTCACTG-CAGCTATAAAAGA 3969778 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | |||| |||||| || | ||| || | ||||||||| || |||||||| Sbjct 3969777 GTCCTCTGATTTTCTGTCCACATGGATGCAGTAGAAATTCTGAGGCATATAAATGGCCCT 3969718 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || |||||||| | ||| || || || || || || || Sbjct 3969717 TAGGAGCCTGTCAAGCATTTCAATTTTATGATGAACCACTATGGAATATGCAATTGGGAA 3969658 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 | | |||||| || |||| | | | ||| || ||| ||||||| ||| | Sbjct 3969657 GCCTGCCTCCTCTTTACCAAGGGGTTCCATGATGTATTTGCGCATCTTGATGAAAGAGGT 3969598 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 ||| || | |||||||||||||| Sbjct 3969597 ACAGTCACTGGTCATGTTGATATA 3969574 >seq2 Length=46765855 Score = 159 bits (176), Expect = 4e-34 Identities = 229/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| | | |||| || ||||| || || || || || |||||||| ||| Sbjct 36241111 TAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGACAC 36241170 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || ||||| ||||||| || || ||||| || || | | ||| || ||| Sbjct 36241171 ATGTAACACCCTTCATCCTCCAGTGTTGTGTTCCAGAAGGTAATGGCTGATTTGTGGAAT 36241230 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | || ||||| | ||| || || ||||| || |||||| Sbjct 36241231 CCCAGCTCAGTGATGTTTACCCTGTCCTTATAGGCAGGCTGGACCACAACCCCATGGTTC 36241290 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 || ||| ||||| ||||||| || ||||| ||||| | |||||||| || || || Sbjct 36241291 TCACTGTAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACAATT 36241350 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | | || | || ||||| |||||||| | || || || ||||||||||| | | Sbjct 36241351 AAGATTTCCTGGGAAGTTTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCTTT 36241410 Query 168450 CGCTCATCTTGAGTTACGACCTG 168472 | ||||| || || || || || Sbjct 36241411 CTTTCATCCTGGGTCACCACTTG 36241433 Score = 123 bits (136), Expect = 3e-23 Identities = 149/202 (74%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 167901 ACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGA 167960 ||||||||||| || || |||| ||| ||||||| || || || |||||||| | | Sbjct 36238570 ACAGTTCCCAAGTGCAGGACCTGGCAGGTCACCTCC---TTCCCAACCTGACTCTTGGCA 36238626 Query 167961 TCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTC 168020 ||||| || ||| |||||||| ||| ||| || ||||| |||| |||| | | Sbjct 36238627 TCTTTGACCCGTAGGATGCTAGTGACAGATGTGGTCCCATTATGATGCAAAATACTCTCA 36238686 Query 168021 GTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCT 168080 || || |||||||||||||| || ||||||||| | || ||||| || || || || Sbjct 36238687 GTACTATTCTCAATCCCTGACCCACTGACCTTCCAGGAGATCACAGGTGCTGGGCGGGCA 36238746 Query 168081 GTAGCAGAGCAGGTAATATTTA 168102 || |||||||| || || |||| Sbjct 36238747 GTGGCAGAGCAAGTGATGTTTA 36238768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577188686750040