Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_020490.2 Length=44714 Score E Sequences producing significant alignments: (Bits) Value seq371 214 5e-51 >seq371 Length=40469 Score = 214 bits (236), Expect = 5e-51 Identities = 385/555 (69%), Gaps = 16/555 (3%) Strand=Plus/Minus Query 10215 ACGCCACAAGATGTTAGAGAGGTAGCAATGAAAGATAGCGACAAACCTCATGTAATTTGC 10274 || |||||||| |||||| ||| ||||| |||| |||||||| || || || | Sbjct 1574 ACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGACAAACCACAAGTTATATTT 1515 Query 10275 ATCGACTACCTACAACTTATGAAATCGGACTTACCACAAAAAGATAGACGACTAGAAGTA 10334 || || ||||| ||| | ||| || | || ||| | | |||||||| | | ||| Sbjct 1514 ATTGATTACCTTCAATTAATGGAAACAGA--TACTA-ATGTTGATAGACGCGTTGCAGTT 1458 Query 10335 GAAAAAATCAGTCGTGATTTAAAAATCATTGCTAAAGAAACAGGTTGCCTAATTATCGCA 10394 ||||| || || || || |||||||| || || |||||||| || |||||| | | Sbjct 1457 GAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGGA-GC--AATTATAGTA 1401 Query 10395 ---CTATCACAATTAAGTCGTGGTGTTGAGAGTAGACAAGACAAGCGACCTATGATGTCT 10451 || || ||||| | |||||| ||||| ||| | || || || || ||| | || Sbjct 1400 GTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACGTCCGATGTTATCA 1341 Query 10452 GACCTAAGAGAAGCTGGAGGCATTGAACAAGACGCTAACATGATATTCATGCTTTACAGA 10511 ||| | | ||| | || || |||||| |||||| | ||| | ||| | || ||| Sbjct 1340 GACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGATGATGTTGTATAGA 1281 Query 10512 GATGATTACTACAATAGAGAACTTGCAGATGATGATACAGGTAAATCAGATATAGAACTT 10571 |||||||||||| | | || || || ||||| | |||||||| | ||| | Sbjct 1280 GATGATTACTACGA---ACAAGATGAAGCAGATGAATCTGGTAAATCTATCGTTGAATGT 1224 Query 10572 AATGTTGCTAAAAACAAAGACGGTGAAACAGGTGTTGTTGAATTAGAGTTCTATAAGAAA 10631 ||| | || || |||||||| |||||||| |||||| ||||||| || || || |||||| Sbjct 1223 AATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGAATTTTACAAGAAA 1164 Query 10632 ACGCAGAGGTTTTACTCATGATTATTGCAGAGTTGCAGCAAACGTTAGGTGTTATGTATC 10691 || |||||||||| | ||||| | | ||| | || || || |||| | | || Sbjct 1163 ACACAGAGGTTTTTCACATGAGTGTAGCACAATTTCAACAGCTACTAGGATATCTCTACA 1104 Query 10692 GAGAAGTATATAAAGATGAGCCACTCATTCGAG--AACTTATTCTCGAAATGGGTTGGGC 10749 ||||| ||||||||| || | |||||| || |||||| || ||| | |||||||| Sbjct 1103 GAGAAACATATAAAGACGATACGGTCATTCAAGCTAACTTA--CTTGAATTAGGTTGGGC 1046 Query 10750 CATTGATAGATTGCT 10764 | || |||||||| Sbjct 1045 GACAGAGAGATTGCT 1031 Score = 185 bits (204), Expect = 2e-42 Identities = 345/504 (68%), Gaps = 7/504 (1%) Strand=Plus/Minus Query 7581 GTGATTAAATGCCAATTATTAAAAATTACATTACTCAAGATGACGGTACAACTACCGTTG 7640 ||||||| ||| | | || ||||| ||||| ||| |||| || |||| || | | Sbjct 4102 GTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATGATGGCACAATAACTGCCG 4043 Query 7641 TCATTGAGGGTGTAGAACTAGATAACAAAACGTCACTTCTATTAGATAACGGTTTTGATG 7700 |||||||||||||| ||| ||||||| | | ||| | |||||||| || || | Sbjct 4042 TCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACTACTTGATAACGGATTAGAAG 3983 Query 7701 TAGAAGTCGATGT--CATTCCAGTTGATCCATTCAGAATAACGAATAAGCAGCGTAAGAA 7758 | ||| | |||| || || ||||| |||| || |||||| ||||||| |||| || Sbjct 3982 TTGAATGCAATGTAGCAGTC--GTTGACCCATACAAAATAACTGATAAGCAACGTAGAAA 3925 Query 7759 GATATTCGCACTTGTCAAAGATATAGAAGTCCATACAGGTATGCCAATGGACTATATGCG 7818 ||||||| ||||| || |||||||||| |||||||| | |||| || |||||| | Sbjct 3924 AGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCACGCCACAAGATTATATGAG 3865 Query 7819 CCATATGTTTATCGAATATGTAAGAACGTATTACGGATATGATGAACGCATTTCACTTAG 7878 || | || ||||||||| | | ||||| || ||||| ||||| |||||| Sbjct 3864 GAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGATGAGCGCATATCACTTGC 3805 Query 7879 TAACTGCACACGTACACAAGCCAGTCAGATTATCGAAGTAACAATCGACTGGGTATTCGC 7938 | | || | | | | || ||||| ||||| || ||| |||| || ||| |||||| Sbjct 3804 TGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGCAATTGAATGGATATTCGA 3745 Query 7939 TAACGGAATAATACTCGCATACAAAACAAGTGATTTATTAAAAGGCGATAAGTCGTTACT 7998 ||| || ||| ||| |||||||||||| || | || || | |||| | Sbjct 3744 GAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAAGAATGACAGAACGTTTTT 3685 Query 7999 TTACTGGGCGACAGTCAATCGTAATTGTGTATTATGTGGCAAAAGTGGAGCAGACCTTGC 8058 ||| ||| || |||| | || || || | |||||||| | ||||| || || Sbjct 3684 ATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAGAGCTAGC 3628 Query 8059 ACATCACTACGCAATAGGTCGTGG 8082 |||| | | ||| |||||||||| Sbjct 3627 ACATTATCAAGCAGTAGGTCGTGG 3604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142956020477448