Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 seq88 86.0 7e-12 >seq1 Length=78885850 Score = 136 bits (150), Expect = 5e-27 Identities = 475/728 (65%), Gaps = 25/728 (3%) Strand=Plus/Minus Query 75899 CAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAAC 75958 ||||| ||||| || || ||||| ||||| ||||| ||| | | ||| ||||||| ||| Sbjct 12368098 CAGACAGAGACAGGCACCCCATACATGCTCTACAAAGATTCCTATAATCAGAAGAGCAAC 12368039 Query 75959 CAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACA 76018 ||| |||| ||||||||||||| || ||||| ||||| ||||| ||||||| || Sbjct 12368038 CAACAGAACCTGGGAACAATCAAATGCAGCAATCTGTGCACAGAAATAGTAGAGTATACC 12367979 Query 76019 GATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAAT 76078 || |||||| || ||||| || ||||| || | ||||| || |||||||| Sbjct 12367978 AGCAAAGATGAGGTTGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAAAATGTATGTCATA 12367919 Query 76079 GAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCAC-AAAG--ATTGTTACC 76135 ||| | ||| | ||| | | | ||| | ||| |||| |||| ||||| | Sbjct 12367918 TCAGA---ACACACATATGACTTTAAGAAATTGGCAGAAGTCACTAAAGTCATTGT---C 12367865 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTC 76194 |||| | || | | ||| | | ||| | || || || ||| || | || Sbjct 12367864 CGAAATTTGAATAAAATTATTAATATAAACTACTACCCTGTCCCAGA-GGCACACTTATC 12367806 Query 76195 TAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTT 76254 |||| | || | || ||||| | || ||||||| || || ||| ||||| | Sbjct 12367805 AAATAAACACCATTGCCCCATTGGAATTGGGGTTCAAGACCTGGCAGATACTTTTATCCT 12367746 Query 76255 GTGCCGCTACGCATTTGA---TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGA 76311 | | || | ||||| | || || ||| || |||| | |||||||| Sbjct 12367745 GATGAGATATCCTTTTGAAAGTCCA---GAGGCCCAGTTATTGAACAAGCAAATCTTTGA 12367689 Query 76312 AACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTA 76371 || || ||| | | | ||||||| || || ||||| | || | | || | | || Sbjct 12367688 GACTATTTATTATGTAGCCCTGGAAGCCAGCTGTGATCTAGCCAAGGAGCATGACCCATA 12367629 Query 76372 TGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGG 76431 ||| || | |||||| ||||| | | |||| | ||| || ||| |||| |||| | Sbjct 12367628 TGAAACCTATGAGGGCTCTCCAGTAAGCAAAGGAATTCTTTGGTATGAAATGT-GGAATG 12367570 Query 76432 TGAAACCAAGCTCAACTA--CGACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGG 76487 | | || | | | ||| |||||| | |||||||||| || ||| || | | Sbjct 12367569 TTACTCCCA-CAGACCTATGGGACTGGAAACTTCTCAAGGAGAAGATTGCAA--AGTATG 12367513 Query 76488 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 76547 || | | |||||| | | || || ||||| || || || || || || || ||||||| Sbjct 12367512 GTATAAGAAACAGTTTACTTATTGCCCCAATACCTACTGCTTCAACTGCTCAGATCTTGG 12367453 Query 76548 GTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAG 76607 | ||||| || | | ||||||| || || | ||||||||| |||||| | | ||| Sbjct 12367452 GGAATAACGAGTCCATTGAACCTTATACTAGCAACATCTACACTCGAAGAATCTTGTCAG 12367393 Query 76608 GTGAGTTT 76615 | || ||| Sbjct 12367392 GAGAATTT 12367385 >seq88 Length=9715273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || || || ||||| ||||| ||| | ||||| |||||| Sbjct 5552599 TCTCAGACAGAGACAGGCACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGAGC 5552658 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| ||||||||||||| || || || ||||| ||||| ||||||| Sbjct 5552659 AACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGTAT 5552718 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 5552719 ACCAGCAAAGATGAG 5552733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596538063839520