Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq148 118 2e-21 seq16 111 3e-19 seq126 95.1 2e-14 seq35 89.7 9e-13 >seq148 Length=4887613 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| ||||| ||||| |||| |||| |||||| || || ||||| Sbjct 4050771 ATTCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCA 4050830 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||| || ||||| || | ||||| || |||||| Sbjct 4050831 GAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 4050890 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || |||| || | ||| ||| ||||| | || Sbjct 4050891 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCC 4050950 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||||| || || || || || || || || || || || ||||||||||| Sbjct 4050951 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || ||||| |||| || | |||||| ||||| || || Sbjct 4050543 ATCCCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCA 4050602 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || ||| Sbjct 4050603 GAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGA 4050662 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || |||| |||| ||| ||| ||||| | || Sbjct 4050663 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCC 4050722 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || || || ||||| || |||||| Sbjct 4050723 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 Score = 89.7 bits (98), Expect = 9e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| |||| || || || || |||| || | ||| || ||||| ||||| || Sbjct 4050318 CCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAA 4050377 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || || ||||| || | ||||| || |||||||| Sbjct 4050378 AGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050437 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || || |||| || | ||| ||| ||||| || ||| || Sbjct 4050438 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACC 4050497 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || ||||| || ||||| Sbjct 4050498 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq16 Length=31725842 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | |||| | || ||||| | || | ||| || ||| || || || || Sbjct 21647024 ACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGA 21647083 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | ||| || | ||| || || ||||| || | || || ||||||||||| Sbjct 21647084 CAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| ||||| || || |||| ||||| |||| ||||| || || | ||||| Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || ||||||||||| || ||||| || Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq126 Length=6421402 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 ||| || || ||||| || | | || ||||||||||| |||||||| ||||| || || Sbjct 2409892 TTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGAT 2409951 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 |||| ||||| |||| ||||| || || | ||| | || || || || || || || Sbjct 2409952 CTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCC 2410011 Query 193334 TGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || |||||||| || || ||||| || Sbjct 2410012 TGTAAGGGTTTTTACGAAAATCTGCATCTT 2410041 >seq35 Length=22943593 Score = 89.7 bits (98), Expect = 9e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| || || ||||| || | | || ||||||||||| |||||||| || Sbjct 21587331 ATCTTCCACTTGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTT 21587272 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| | || |||| |||||||| || ||||| || ||||| || Sbjct 21587271 ATCCTGGATCTTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGAT 21587212 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || | || || ||||||||||| || || || || Sbjct 21587211 GGTCTTCCTTGCAAGAGTTTTTACAAAAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899606842019280