Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-24 seq126 111 3e-19 seq148 102 2e-16 seq39 102 2e-16 seq35 96.9 7e-15 >seq16 Length=31725842 Score = 129 bits (142), Expect = 1e-24 Identities = 145/193 (75%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| || || | | |||| |||| ||| ||||||||||||| Sbjct 21647063 CTTTTGA-ATGTTGTAATCAGACAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGA 21647121 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | || || |||||||| || |||||||| ||||| || || || ||||||||| Sbjct 21647122 TCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTT 21647181 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| ||||| | ||| || || || || ||||| || || || | ||||| | || Sbjct 21647182 CTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAA 21647241 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 21647242 AAATCTGCATCTT 21647254 >seq126 Length=6421402 Score = 111 bits (122), Expect = 3e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || ||||| || || || ||| ||| |||| ||| ||||||||||||| Sbjct 2409850 CTTTTGA-ATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAAGA 2409908 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | || |||||||| || |||||||| ||||| || || || ||||||||| Sbjct 2409909 TCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTT 2409968 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| ||||| | ||| | || || || ||||| || || || | ||||| | | Sbjct 2409969 CTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTACGA 2410028 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 2410029 AAATCTGCATCTT 2410041 >seq148 Length=4887613 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| |||||| |||||| Sbjct 4050543 ATCCCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCA 4050602 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | || || || |||||||| | ||||| || || || Sbjct 4050603 GAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGA 4050662 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || |||||||| || | ||| | ||| Sbjct 4050663 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCC 4050722 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| || || ||||| || ||||| | || || | ||| ||||||||| Sbjct 4050723 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 Score = 100 bits (110), Expect = 6e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||||| |||||| ||| || || ||| Sbjct 4050771 ATTCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCA 4050830 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || | ||||| || |||||||| | ||||| || ||||| Sbjct 4050831 GAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 4050890 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | ||| | ||| Sbjct 4050891 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCC 4050950 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||||||| || ||||| || ||||| | || || | || || |||||||| Sbjct 4050951 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||| | || | || | ||| | ||| || |||||| || ||||| Sbjct 4050318 CCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAA 4050377 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 4050378 AGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050437 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||||||||| || || || || ||||| || | ||| | || || Sbjct 4050438 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACC 4050497 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | || || | ||| |||||||| Sbjct 4050498 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 >seq39 Length=21454635 Score = 102 bits (112), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| || || ||| |||| |||| ||| ||||||||||||| Sbjct 17272267 CTTTTGA-ATGTTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGA 17272209 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | || || |||||| | || |||||||| ||||| || || || ||||||||| Sbjct 17272208 TCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTT 17272149 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 | | | || | | ||| || || || || ||||| || | | || ||||| | | Sbjct 17272148 CTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGTCTTCTCCATAAAGGTTTTTACGA 17272089 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 17272088 AAATCTGCATCTT 17272076 >seq35 Length=22943593 Score = 96.9 bits (106), Expect = 7e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || |||||||| || | || |||| |||| ||| ||||||||||| | Sbjct 21587364 CTTTTGA-ATGTTGTAATCAGACAAAGCATGTCCATCTTCCACTTGCTTACCAGCAAATA 21587306 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | | || |||||||| || |||||||| ||||| || || || | |||||| Sbjct 21587305 TCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTCTACATTTT 21587246 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| |||||| ||| || || ||||| ||||| || | | | ||||| | || Sbjct 21587245 CTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTTGCAAGAGTTTTTACAA 21587186 Query 192527 ATATCTGCATTTT 192539 | ||||| || || Sbjct 21587185 AAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984426656874150