Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq16 113 8e-20 seq126 105 1e-17 seq148 96.9 6e-15 seq39 93.3 8e-14 seq117 87.8 3e-12 seq35 87.8 3e-12 >seq16 Length=31725842 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | | || || || | ||| | || | ||| || ||| || Sbjct 21647015 TTTCTTAGCACCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTT 21647074 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 ||||| || |||| | | | || |||| ||| ||||||||||| || | || || || Sbjct 21647075 GTAATCAGACAAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTG 21647134 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || ||||||||| |||||| ||||| Sbjct 21647135 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGA 21647194 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | || |||||||| || Sbjct 21647195 GGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq126 Length=6421402 Score = 105 bits (116), Expect = 1e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || |||| ||| | | |||| ||| ||||||||||| || | | Sbjct 2409856 AATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAAGATCAGCCC 2409915 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || ||||| || |||||||| ||||| || || || ||||||||| |||||| Sbjct 2409916 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGT 2409975 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | ||| | || || || ||||| || || || | ||||| | ||| ||||| Sbjct 2409976 GTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTACGAAAATCTG 2410035 Query 172067 CATTTT 172072 ||| || Sbjct 2410036 CATCTT 2410041 >seq148 Length=4887613 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||||| |||||| || || || || Sbjct 4050771 ATTCCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCA 4050830 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | ||||| || ||||| || | ||||| |||||||| Sbjct 4050831 GAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGA 4050890 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || || ||||| || ||||| | ||| Sbjct 4050891 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCC 4050950 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 |||||||| || ||||| || ||||| | || || | ||| || |||||||| Sbjct 4050951 ACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTT 4051003 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||| | |||||| ||||| ||||| Sbjct 4050543 ATCCCACCTCTCAGGCGCAGGACCAGGTGCAGAGTGGACTCTTTCTGGATATTGTAATCA 4050602 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || | || || | || || || ||||| || | ||||| ||||| || Sbjct 4050603 GAAAGAGTGCGGCCATCTTCAAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGA 4050662 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || |||||||| || ||||| | ||| Sbjct 4050663 GGGATGCCTTCTTTATCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCC 4050722 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || ||||| || ||||| | || || | || ||||||||| Sbjct 4050723 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 4050773 >seq39 Length=21454635 Score = 93.3 bits (102), Expect = 8e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || |||| ||| | || |||| ||| ||||||||||| || | || Sbjct 17272261 AATGTTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCT 17272202 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || ||| | || |||||||| ||||| || || || ||||||||| | | || Sbjct 17272201 TTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTGTTGT 17272142 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || | | ||| || || || || ||||| || | | || ||||| | ||| ||||| Sbjct 17272141 GTCCTAGGGTTCAACCTCGAGCGTGATGGTCTTCTCCATAAAGGTTTTTACGAAAATCTG 17272082 Query 172067 CATTTT 172072 ||| || Sbjct 17272081 CATCTT 17272076 >seq117 Length=6347111 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || || | ||| || | ||||| |||||||| || || ||||||||| Sbjct 1554136 TCTTCCAGCTGCTTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTA 1554077 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || |||||||| || ||||| | ||| ||||| ||||| ||| Sbjct 1554076 TCCTGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATG 1554017 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| | || || ||||| || |||||||| Sbjct 1554016 GTCTTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTT 1553979 >seq35 Length=22943593 Score = 87.8 bits (96), Expect = 3e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || |||| || | || |||| ||| ||||||||||| || | | Sbjct 21587358 AATGTTGTAATCAGACAAAGCATGTCCATCTTCCACTTGCTTACCAGCAAATATCAGCTT 21587299 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || ||||| || |||||||| ||||| || || || | |||||| |||||| Sbjct 21587298 TTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTCTACATTTTCTATAGT 21587239 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| ||| || || ||||| ||||| || | | | ||||| | || ||||| Sbjct 21587238 ATCTGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTTGCAAGAGTTTTTACAAAAATCTG 21587179 Query 172067 CATTTT 172072 || || Sbjct 21587178 TATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905088152248200