Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq57 100 8e-16 seq26 96.9 1e-14 seq67 84.2 6e-11 >seq57 Length=14644473 Score = 100 bits (110), Expect = 8e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| ||||| || || ||||||| ||||| ||||| Sbjct 10113473 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCAATGAGCCCTTCACGACCCCCCATGGCATG 10113414 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | | ||| |||| || || ||||| Sbjct 10113413 GAAGAAGAACTCAGTGGGTGTGAGGCCGGCCAGGTAAGAGTTCTCCACAAAGCCACGGCT 10113354 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| || || |||| | ||||| ||||| |||| || || | | || |||| Sbjct 10113353 CTCAGGCCCATAATCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTAAATCCAAATGG 10113294 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || || ||||||||||| Sbjct 10113293 GATCCGCTTGCCCTCCACATTCTGCTGTCC 10113264 >seq26 Length=26652979 Score = 96.9 bits (106), Expect = 1e-14 Identities = 221/326 (68%), Gaps = 15/326 (5%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || || || || | ||||||||||||||||| ||| ||| Sbjct 3408649 TTTGTGATCTTTCCTATCGAGTACCACAATATTTGGCAGATGTATAAGAAAGCCGAAGCC 3408590 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | ||| || ||| | ||||||||| |||| |||||||||| | Sbjct 3408589 TCCTTTTGGACGGC---TGAGGTGGATCTTTCCAAAGACATTCAGC--ACTGGGAAGCAC 3408535 Query 133194 TTA---CTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGT 133249 | | ||||||| | | |||||||||| ||| | | | || |||||||| || Sbjct 3408534 TAAAGCCTGGGGAG---AGATATTTTATTTCACATG-TCCTCTCTTTCTTTGCTGCCAGC 3408479 Query 133250 GATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAA 133309 ||||| || | || ||| | | || |||| ||||||||| | | ||| Sbjct 3408478 GATGGCATACTCAACGAGAATCTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTACAGAA 3408419 Query 133310 GCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCT 133369 ||||| || ||||| | || ||||| |||||||||||||||||| | || | Sbjct 3408418 GCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATATCCATTCTGAAATGTACAGT 3408359 Query 133370 ACTCTAATTGATACTTACATCAAAGA 133395 || ||||| |||||| | ||||| Sbjct 3408358 CTCCTTATTGACACTTACGTTAAAGA 3408333 >seq67 Length=13130224 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||||| ||| ||| ||||||| ||||||| || | || | | | || | ||| Sbjct 2191250 GCTCCAACACCCACAAACATTTCATCAAATTCTGATCCAGAAGCATAATAAAAAGGAACA 2191309 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 | ||||| ||||| || || | || ||||||||||| |||||||| |||||||| || Sbjct 2191310 TCAGCTTCTCCTGCCACAGCTCGGGCGAGAAGTGTCTTTCCTGTTCCTGGTGGTCCAACT 2191369 Query 289231 AATAGAACTCC 289241 || |||| ||| Sbjct 2191370 AAAAGAATTCC 2191380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471737850943173