Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021332.1 Length=41392 Score E Sequences producing significant alignments: (Bits) Value seq371 518 9e-143 >seq371 Length=40469 Score = 518 bits (574), Expect = 9e-143 Identities = 856/1235 (69%), Gaps = 13/1235 (1%) Strand=Plus/Minus Query 8505 CAATTTGAAATTGAAAGCACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 8564 |||| |||||||||||| || | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 8565 AAGATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 8624 ||| ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 8625 GTAATGGACGTCGGAAAGATAGATCATCAAGAAATCTATTTAAAAGCAACTAAAGATAAA 8684 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 8685 GAGTTTTTAGATGCAGATACTATAACTAAACTTTACAACTCCGATTTCATTGGATACGGA 8744 || ||| | ||| || |||||| | || ||||| |||| ||||| |||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 8745 TTCTTTGAACGTTATCAACAAGANNNNNNNNNNNNNNNNNNAATCAACAAAGCGAAAGAA 8804 |||||||| | ||||||||||| ||| | |||||||| ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 8805 -TTGGTAACTGAGTTCAAACAACAACCTACGAACC--AAAATTTTAATAACTTGATTGAT 8861 || | | | | || |||||| | |||| ||| ||| ||||||| | || |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC--ACCTGAAACTTTTAATGAAATGGTTGAG 2013 Query 8862 GAACTCAAGGATTTAAAAACAATTACTAACAGAAAAGAAGACGGAAC-CAAGAAGTTTGT 8920 |||| || || |||| | || || | || |||||| || || || ||| | | || Sbjct 2012 AAACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGC 1954 Query 8921 TGANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTA 8980 | | ||| || ||| ||| | | | | || || || Sbjct 1953 TAAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATA 1894 Query 8981 TAAGCTCATGGATTACAAAATAGGGGGATTGGAGCCGTCGCAATTAATCGTCATCGCAGC 9040 ||| |||||||| || ||||| || || || ||||| ||||| || || || || || Sbjct 1893 TAAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGC 1834 Query 9041 GCGTCCCTCAGTGGGTAAGACAGGTTTTGCATTAAACATGATGCTGAACATAGCACAAAA 9100 ||||| || |||||||| || ||||||||||| |||||| |||||| ||| || | Sbjct 1833 TCGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACA 1774 Query 9101 TGGATACAAAACATCTTTCTTTAGTCTCGAAACAACTGGCACATCAGTATTGAAACGTAT 9160 || || ||||||| ||||||||| | ||||||||||| | | | || || | | Sbjct 1773 AGGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATT 1714 Query 9161 GTTATCAACAATTACTGGTATTGAGTTAACAAAGATAAAAGAAAT-CAGGAACTTAACGC 9219 | |||| || || |||||||| ||||||| || ||| | | || || || | ||| Sbjct 1713 GCTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGC 1655 Query 9220 CGGATGACTTAACAAAGTTAACGAATGCGATGGATAAAATCATGAAATTAGGCATCGATA 9279 | |||| ||||| | ||||| ||| || ||| |||| | |||||||| || | | Sbjct 1654 CAAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACA 1595 Query 9280 TTTCTGATAAAAGTAATATCACACCGCAAGATGTGCGAGCGCAAGCAATGAGGCATTCAG 9339 || ||| | || | | ||||| ||||| | |||| ||||| |||| |||| | Sbjct 1594 TTAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTG 1535 Query 9340 ACAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTG 9399 ||| | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || |||| Sbjct 1534 ACAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTG 1475 Query 9400 ATAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAACGAGACAG 9459 ||||||| || ||||| |||||||||||||| ||||| || || || || || || |||| Sbjct 1474 ATAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAG 1415 Query 9460 GCGCAATCATCGTACTACTTTCACAACTGAATCGTGGTGTCGAGTCTAGGCAGGATAAAC 9519 | ||||| || ||| | ||||| ||| |||||||||| || || || || | ||||||| Sbjct 1414 GAGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAAC 1355 Query 9520 GACCAATGCTATCGGACATGAAAGAATCAGGTGGAATAGAAGCAGATGCGAGTTTAGCAA 9579 | || ||| |||| ||||||||||| ||||||||||| |||||||| || ||| | || | Sbjct 1354 GTCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGA 1295 Query 9580 TGCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACTGGCAAAT 9639 || | | || | |||||||| || | | || |||| || | || |||| |||| Sbjct 1294 TGATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAAT 1238 Query 9640 CTATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTTG 9699 |||| ||||||||||| |||||||| |||||||| || ||||| || | |||||||||| Sbjct 1237 CTATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTG 1178 Query 9700 AGTATTACAAGAAGACTCAGAGGTTTTTCACATGA 9734 | | ||||||||| || |||||||||||||||||| Sbjct 1177 AATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 205 bits (226), Expect = 2e-48 Identities = 473/703 (67%), Gaps = 11/703 (2%) Strand=Plus/Minus Query 6684 GATGATGACTTACCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCAC 6743 ||||| || |||||||||| | || |||||| ||| | |||| | | || ||| Sbjct 4126 GATGACGATTTACCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCA 4069 Query 6744 TCAAGATGACGGTACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGTAATAAAGAAAC 6803 ||| |||| || |||| ||| | ||||| |||||| | | ||| ||||| Sbjct 4068 ACAAAATGATGGCACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTT 4009 Query 6804 ATTACTACTTGATAACGGGTTTGATGTGGAAGTCGATGTGAGC-GTCATAGATCCGTTTC 6862 ||||||||||||||||| || || || ||| | |||| ||| ||| | || || | Sbjct 4008 TTTACTACTTGATAACGGATTAGAAGTTGAATGCAATGT-AGCAGTCGTTGACCCATACA 3950 Query 6863 GAATTACCGGCAAGCAACGACGAAAAATATTCGCGCTTGTCAAAGACATAGAAGAATATA 6922 ||| || | |||||||| ||||| ||||||| ||||| || || ||||||| ||| Sbjct 3949 AAATAACTGATAAGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATA 3890 Query 6923 CAGGTCAACCAATGGACTATATGCGACATATGTTCATCGAGTATGTAAG-GACTTACTAC 6981 |||| ||| || |||||| | || | ||| || |||||| | | || ||| Sbjct 3889 CAGGCACGCCACAAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTA-TAC 3831 Query 6982 GGCTATGATGAACGTATTTCACTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATT 7041 ||||| ||||| || || ||||| | ||||| | || | | ||||||||||| || Sbjct 3830 GGCTACGATGAGCGCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATA 3771 Query 7042 GAAGCAACGCTTGACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAAT 7101 || | | | |||| |||| ||| | || |||| || || || || ||||| ||| || Sbjct 3770 GATGTAGCAATTGAATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGAT 3711 Query 7102 CTACTGAAACGAGATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATA 7161 ||| | || || | | | || |||||| | | ||| | || | || || || || Sbjct 3710 CTAATCAAGAATGACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATC 3651 Query 7162 TGCGGAAAGCCTCACGCTGACTTAGCACATTACGAAGCAGTCGGCAGAGGTATGAACAGA 7221 || || ||| || || || |||||||||| ||||||| || | || |||||| Sbjct 3650 TGTGGCAAG---CATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGA 3594 Query 7222 AACAAGATGAATCACTACGACAAACATGTGTTAGCACTGTGTAGACAACATCATAATGAA 7281 |||||| | || | |||| | || |||| ||| ||| |||||||| || Sbjct 3593 CGCAAGATAGAACATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAG 3534 Query 7282 CAGCACGCAATTGGTGTTAAGTCGTTT-GATGATAAATATCAATTGCATGACTCGTGGAT 7340 || |||| || || | | | |||| || | || ||||| || | | || ||| | Sbjct 3533 CAACACGACATGGGCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGT 3475 Query 7341 AAAAGTTGATGAGAGGCTCAATAAAATGTTGAAAGGAGAGAAA 7383 | ||||| ||||| || || |||||| ||||||||| |||| Sbjct 3474 GGACGTTGACGAGAGACTAAACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132326154329492