Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_021863.1 Length=42652 Score E Sequences producing significant alignments: (Bits) Value seq371 223 9e-54 >seq371 Length=40469 Score = 223 bits (246), Expect = 9e-54 Identities = 466/690 (68%), Gaps = 7/690 (1%) Strand=Plus/Minus Query 8195 CCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCACTCAAGATGACGG 8254 ||||||| | || |||||| ||| | |||| | | || ||| ||| |||| || Sbjct 4114 CCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATGATGG 4057 Query 8255 TACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGCAATAAAGAAACATTACTACTTGA 8314 |||| ||| | ||||| |||||| | | || ||||| ||||||||||| Sbjct 4056 CACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACTACTTGA 3997 Query 8315 TAACGGGTTCGATGTAGAAGTAGATGTAAACGTTATAGATCCGTTTCAAATTACCGGCAA 8374 |||||| || || || ||| ||||| || | || || | |||| || | || Sbjct 3996 TAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAAATAACTGATAA 3937 Query 8375 GCAACGTCGAAAAATATTCGCGCTTGTCAAAGACATAGAAGAACATACAGGTCAACCAAT 8434 ||||||| ||||| ||||||| ||||| || || ||||||| |||||||| ||| Sbjct 3936 GCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCACGCCACA 3877 Query 8435 GGACTATATGAGACATATGTTCATCGAGTTTGTAAGAACGTACTACGGCTATGATGAACG 8494 || |||||||| || | ||| || | |||| | | |||||||| ||||| || Sbjct 3876 AGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGATGAGCG 3817 Query 8495 TATTTCGCTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATTGAAGCAACGCTTGA 8554 || || || | ||||| | || | | ||||||||||| || || | | | |||| Sbjct 3816 CATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGCAATTGA 3757 Query 8555 CTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAATCTACTGAAACAAGA 8614 |||| ||| | || |||| || || || || ||||| ||| ||||| | || | || Sbjct 3756 ATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAAGAATGA 3697 Query 8615 TAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATATGCGGAAAGCCTCA 8674 | | | || |||||| | | ||| | || | || || || || || || ||| || Sbjct 3696 CAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAG---CA 3640 Query 8675 CGCTGACTTAGCACATTACGAAGCAGTAGGTAGAGGCATGAACAGAAACAAGATGAATCA 8734 || || |||||||||| ||||||||||| | || |||||| |||||| | || Sbjct 3639 TGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACA 3580 Query 8735 CTACGACAAACATGTATTAGCGTTATGTCGCGAACATCATAACCAGCAACATGCGATTGG 8794 | |||| | ||||||| ||||| | |||||||| ||||||| | || || Sbjct 3579 TTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGG 3520 Query 8795 CGTTAAGTCGTTT-GATGATAAATATCACTTGCATGACTCATGGCTAAAAGTTGATGAGA 8853 | | | | |||| || | || ||||| || | | |||||| | | ||||| |||| Sbjct 3519 CATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGA 3461 Query 8854 GGCTCAATAAAATGCTGAAAGGAGAGAAAG 8883 | || || |||||||||||||||| ||||| Sbjct 3460 GACTAAACAAAATGCTGAAAGGAGTGAAAG 3431 Score = 138 bits (152), Expect = 3e-28 Identities = 272/411 (66%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 11662 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTAG 11721 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 11722 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 11775 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 11776 GTATCGAAATACAACCGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACCGATTA 11835 ||||| |||||||||| || | | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 11836 CGTATATAGCTGATTTCTCTTTGTGGAAGGATGGCAAACTGGTCGAAGTTTTAGATGTTA 11895 ||||| || || || | | ||||| | | ||| || | ||||| |||| |||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 11896 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 11955 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 11956 ATGTGAATTTAACGTGGATATGTAAAGCACCTAAGTACACAGGCAAAACATGGATTACTT 12015 |||| || | || ||||||||||||||||||||||||||||| ||| ||| | || | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 12016 ACGAGGAATTAATTAAAGCAAGACGAGAACGCAAAAGAGAAATGAAGTGAT 12066 | || ||||| | || | ||||| |||||||| | || | || ||||| Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136357951844972