Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq126 116 3e-21 seq39 102 6e-17 seq35 98.7 8e-16 >seq16 Length=31725842 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| ||||| | | || | ||| Sbjct 21647039 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATC 21647098 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| ||||||||||| || ||||| || || || || Sbjct 21647099 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 21647158 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| |||||| |||||| || |||| || || || || || || Sbjct 21647159 CTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 21647218 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||||| ||||| |||||||| || Sbjct 21647219 CTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTT 21647254 >seq126 Length=6421402 Score = 116 bits (128), Expect = 3e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| |||| || ||||||||||| ||||||| | || || || || ||||| Sbjct 2409835 ATGAAGGATGGACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTG 2409894 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 || |||||| | |||| | ||||||||| || ||||| || || || || || | || Sbjct 2409895 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 2409954 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 ||| ||| |||||| |||||| || |||| | ||||| || || || || || || Sbjct 2409955 GGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGT 2410014 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| || || |||||||| || Sbjct 2410015 AAGGGTTTTTACGAAAATCTGCATCTT 2410041 >seq39 Length=21454635 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||| | || ||||||||||| ||||| | | || || ||| Sbjct 17272291 CAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATC 17272232 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| || |||||| | |||| ||||||||||| | ||||| || || || || Sbjct 17272231 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATC 17272172 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || ||| ||| ||||| ||||| | |||| || || || || || || Sbjct 17272171 CTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGT 17272112 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | | |||||||| || || |||||||| || Sbjct 17272111 CTTCTCCATAAAGGTTTTTACGAAAATCTGCATCTT 17272076 >seq35 Length=22943593 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 29579 CCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG---GTGCGAGAATCA 29634 ||| |||||| | ||| || ||||||||||| ||||| | ||| | || | ||| Sbjct 21587383 CCAGATGAAGGGGGGACTCCTTTTGAATGTTGTAATCAGACAAAGCATGTCC----ATCT 21587328 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || |||||| |||||| |||||||||| || ||||| || || || || Sbjct 21587327 TCCACTTGCTTACCAGCAAATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 21587268 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || | ||| |||||| ||| || || ||||| || |||||||| || || Sbjct 21587267 TGGATCTTGGCCTCTACATTTTCTATAGTATCTGAGAGTTCAACCTCAAGAGTGATGGTC 21587208 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | | | ||||| ||||| ||||| || || Sbjct 21587207 TTCCTTGCAAGAGTTTTTACAAAAATCTGTATCTT 21587173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385199345441289