Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023499.1 Length=42906 Score E Sequences producing significant alignments: (Bits) Value seq371 206 7e-49 >seq371 Length=40469 Score = 206 bits (228), Expect = 7e-49 Identities = 262/361 (73%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 29960 AAAATTAAAGATCATATCGGTGGTATGGTAGACGCTGTTAAAAGAGGTCTTAATAAATTA 30019 ||||||||| ||| || ||| |||||||| || ||||| || || || ||| | Sbjct 28617 AAAATTAAAAGTCACATAACTGGCATGGTAGATAAAGTAAAAAGTGGACTAAACAAACTT 28558 Query 30020 ATTGAAGGTTTAAACTGGGTCGGTGGTAAGTTGGGTATGGACAAAATACCGAA------G 30073 || |||||| | |||||||| | || || | || ||||||||| |||| || | Sbjct 28557 ATCGAAGGTGTTAACTGGGTAGCAGGAAAACTTGGAATGGACAAACTACCTAAAATCAAG 28498 Query 30074 TTACACACTGGTACTGAACATACACATACTACTACAAGATTAGTTAAGAACGGTAAGATT 30133 |||||||| |||||||||||||| |||| ||||| | | ||||| |||||||||||| Sbjct 28497 TTACACACAGGTACTGAACATACTAATACGACTACTAACGTTGTTAAAAACGGTAAGATT 28438 Query 30134 GCACGTGACACATTCGCTACAGTTGGGGATAAGGGACGCGGAAATGGTCCAAATGGTTTC 30193 || ||||||||||| || || || |||| || || |||||||| ||||||| Sbjct 28437 GCTAAAGACACATTCGCAACTGTGGGCGATAGAGGTAAAGGTAATGGTCCCGGTGGTTTC 28378 Query 30194 AGAAATGAAATGATTGAATTCCCTAATGGTAAACGTGTAATCACACCAAATACAGATACT 30253 || ||||||||||| | || || |||||| || ||||||||| || | |||||| Sbjct 28377 CGACATGAAATGATTCGTTATCCAAACGGTAAAACTGCAATCACACCTAACAGAGATACA 28318 Query 30254 ACGGCTTATTTACCTAAAGGCTCAAAAGTATACAACGGGGCACAAACTTATTCAATGTTA 30313 || || ||| | || |||| || | || ||||| || || || || || |||||||| Sbjct 28317 ACAGCATATCTTCCACAAGGTTCTACTGTCTACAATGGCGCGCAGACACATGCAATGTTA 28258 Query 30314 A 30314 | Sbjct 28257 A 28257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137170711026664