Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023500.1 Length=43301 Score E Sequences producing significant alignments: (Bits) Value seq371 255 2e-63 >seq371 Length=40469 Score = 255 bits (282), Expect = 2e-63 Identities = 324/441 (73%), Gaps = 16/441 (4%) Strand=Plus/Minus Query 11956 ATATTTGATAT-TTAGAGG--TGGCGCAAT-GAGTAAATACAATGCTAAGAAAGTTGAGT 12011 ||||||||| | ||| ||| ||||||| | ||||||||||||||| ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 12012 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGTGAATATTACCAATATTTAGAA---- 12067 | ||||| || || ||||||||||| || ||||| || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 12068 -AGTAAT-ATGAATGGCACTAATTATGATCATATCGAAATACAACCGAAATTCGAATTAT 12125 | |||| || |||| |||||| ||||||| |||||||||| || || || Sbjct 658 GATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTAA 605 Query 12126 TACCAAAACTAGATAAACAACGAAAGATTGAATATATTGCAGACTTCGCGTTATATCTCG 12185 |||| ||| | | ||||||||| || | |||||||||||||||||| || ||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 12186 ATGACAAACTGATTGAAGTTATCGACATTAAAGGTATGCCAACCGAAGTAGCAAAACTTA 12245 | ||||| |||||||||| || ||| ||||||| ||| | || ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 12246 AAGCTAAGATTTTCAGACATAAATACAGAAACATAAAACTCAATTGGATATGTAAAGCAC 12305 | || ||| | || ||| || ||| || ||||||| | ||||||||||||||||| Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 12306 CTAAGTACACAGGCAAAACATGGATTACTTACGAGGAATTAATTAAAGCAAGACGAGAAC 12365 ||||||||||||| ||| ||| | || || || ||||| | || | ||||| |||| Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 12366 GCAAAAGAGAAATGAAGTGAT 12386 |||| | || | || ||||| Sbjct 364 GCAAGAAAGCTAAGAGGTGAT 344 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 8731 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATTTGCGGAAAGCCTCACGCAG 8790 |||| ||||| |||||| ||||| | || || || || || || |||| | |||| Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 8791 ACCTAGCACATTATGAAGCAGTCGGCAGAGGCATGAACAGAAATAAGATGAATCACTATG 8850 | |||||||||||| ||||||| || | || |||||| ||||| | || | | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 8851 ACAAACATGTATTAGCGTTATGTCGTGAACATCACAACCAGCAACATGCGATGGGCGTTA 8910 |||| | ||||||| ||||| ||||| || ||||||| | |||||| | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 8911 AGTCGTTTGA-TGATAAATATCACTTGCATGACTCGTGGCTAAAAGTTGATGGAAGATTA 8969 | | |||| | | | || ||||| || | | || ||| | | ||||| | ||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 8970 AACAAAATGTTGAAAGGAGAGAAA 8993 ||||||||| ||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138434647549374