Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023582.1 Length=92417 Score E Sequences producing significant alignments: (Bits) Value seq371 309 2e-79 >seq371 Length=40469 Score = 309 bits (342), Expect = 2e-79 Identities = 433/597 (73%), Gaps = 8/597 (1%) Strand=Plus/Minus Query 27956 CAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTC 28015 |||||||| | | || ||| || || ||| ||||| | || || ||||||||| | Sbjct 21308 CAAATACTTCATTAGAGATTCGTCCAATTAGTGGTAACTTGAACACGAAAGGACAAGTAC 21249 Query 28016 AATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAA 28075 |||| || ||||| ||||| ||||| || ||||||| |||||| |||||||| | | Sbjct 21248 AATCCGGGCAAAATTTTGGTGACTACGCAGAGTATTATGAATCCCAAAGTGGCCAACCGA 21189 Query 28076 TTCCTACT-GGTAATATAGTTACACTTGATGGCAGATTTATAAGAAAAGCACAAGTCAAT 28134 ||| || | |||| || ||||| |||||||| | | ||| |||||||| | | ||| Sbjct 21188 TTC-TATTAGGTACCATTGTTACGCTTGATGGTCGTTATATTCGAAAAGCAAACATAAAT 21130 Query 28135 GATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTC 28194 ||| || | ||| |||| || | || ||||| |||| |||| |||||||||| Sbjct 21129 GATGAACCTTTAGGTATTATTTCAGGCACTGCAGGTATTATACTAGGTGACCAAATGTGG 21070 Query 28195 CATCACAAAGATAAATATCTTAAAAA-TGAGTTTGGCG-GAGTCATTACTGAAAGCGTCA 28252 |||||||||||||||| ||||||||| ||| ||||| | || | | |||||| || | Sbjct 21069 CATCACAAAGATAAAT-TCTTAAAAAATGAATTTGGTGTGACGC-TCACTGAACTTGTTA 21012 Query 28253 AAAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTA 28312 |||| ||||||||||||||| || |||||||||||||| ||| || | || | Sbjct 21011 AAAAGCAATGGCAAGATGATGAAGGCAATTGGTATTCAGAAGAAGTTGAGTTACCTATAG 20952 Query 28313 AAAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTATCTCGTGCTGAACGACCAG 28372 ||||||| |||||||| | | || ||||||||| |||| || ||||||| |||| Sbjct 20951 AAAATCCTGATTTTGATTCTAGCAAAGACGAAGAATATTTATCACGATCTGAACGCCCAG 20892 Query 28373 AATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAG 28432 ||||||| || || || | || || ||| ||| | | || ||||||||||| | Sbjct 20891 AATGGAATGTGGTTGGATTAATGGGACAAATATTCACGCGTATTGATGGTACTGTATCTG 20832 Query 28433 AAAATGATTATAT-TAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTAT 28491 ||||| | || |||||| |||| ||| | ||||| |||||||||| ||||||| Sbjct 20831 TGAATGACAAAATCAAAGCCAATAAA-GGTATTGGAACGAAAGATAATAACAATGGTTTC 20773 Query 28492 TATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCA 28548 ||| | || | || ||||||| |||| |||| || |||||||| || || ||| Sbjct 20772 TATCGTGTGTTAGAAGTTACTACACCATTTGATTCTGAAAAAGGTTACGGCGTTGCA 20716 Score = 300 bits (332), Expect = 9e-77 Identities = 931/1440 (65%), Gaps = 25/1440 (2%) Strand=Plus/Minus Query 26337 TGTTAACGATTATGGTGCTGACCCTACAGGTCAAAAAGATTCAACATTAGCATTCCAAAA 26396 ||| || ||||||||||| ||||| || || |||| |||||| || ||| || |||| Sbjct 22927 TGTGAATGATTATGGTGCAGACCCAACGGGGCAAACAGATTCTACGGAAGCGTTTAAAAA 22868 Query 26397 AGCATTTGGAGAAGGTCATAGACATGTTCATATGACAGAAGGTACTTATATTATATCTGG 26456 ||| | ||| || || |||| || ||||| | || ||||| || || ||| Sbjct 22867 AGCGGTGCGAGGTGGAAATGTTCATGCACACATGACTGCGGGCACTTACATCATTAGTGG 22808 Query 26457 TGTTAAAATGCCTAACTATACGATTTTAAGTGGGGAAGGTAAAGGAATAACATATTTAAG 26516 ||||| |||| ||| |||| | ||| || ||||||| | || || |||| | Sbjct 22807 ACTTAAATTGCCAAACAATACAGTATTATCCGGTGAAGGTATTGATATCACTAATTTGAA 22748 Query 26517 GATTGCAGATGATGCGCCAGCTGAAACAATTGGTATAACTAACTTAAATATGGATGGANN 26576 ||||||||| ||| |||||| |||| || ||||| || || ||||| || Sbjct 22747 AATTGCAGATACTGCACCAGCTCAAACGATAGGTATTACAAATGAGGATATGACAGGTAA 22688 Query 26577 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAGAACAAGACAAGGGAA 26636 ||| || |||||| || Sbjct 22687 CGCAACAAACATTTATATTGATAATTTCACAATTGATGGTAATCGATACAGACAAAATAA 22628 Query 26637 TACGTTATCTCCAGCTGGTGGTTCACGTTCAAGTAACATTAGATTTGCTGGTGTTAAGCA 26696 ||| || || ||||||||| ||| |||| | | ||||| |||||||| Sbjct 22627 AGTATTACAACCTGCGGGTGGTTCATTGTCATCTAACGTACGTTTTGCCGGTGTTAAATT 22568 Query 26697 TGGCTTTGCATATTCTGTAGAATCATTTAGTAGTTTATTACATGGTATTGATATAACGTA 26756 || ||| ||| || ||||| || | ||||||||||||| |||| || || || Sbjct 22567 CGGTGGTGCTTATAAAGTTAAATCAATTGATGGTTTATTACATGGCTTTGACATCACTTA 22508 Query 26757 CGCTAGTGATGATTATTTTTATCAAGGAGACGGAATCAGAGTAAAAGAAGCATTAGAAAG 26816 || |||||||| || | ||||||||| || || | ||||| | ||||| | ||||| Sbjct 22507 TGCGAGTGATGAATACTATTATCAAGGTGATGGTGTAAGAGTTAGTGAAGCGCTTGAAAG 22448 Query 26817 TAAATATATTCATATACAAGAATGTGAAACTTATGATTTCGGAGACGATGGTATTACTAC 26876 ||| ||| | || | ||| || | | || || || ||||| ||||| || Sbjct 22447 TAAGTATGTAACGATTGATAGTTGTATTGCTAAAGGCTTTGGCGATGATGGAATTACAAC 22388 Query 26877 TCATCATAGTAGATACTTAATTCTACAAAACAACTATTCACACGACCCAGTAAAAGATAG 26936 |||||||||||||| |||| | |||||||||||| ||||| ||| || Sbjct 22387 ACATCATAGTAGATATTTAACAATTAGTAACAACTATTCAGCAGACCCTGTAGCAGCCTC 22328 Query 26937 TGGGAACC--ATAAC---GGTATTGAAGTAGACGATGGTTCACAACATGTGTTTGTTATG 26991 | |||| ||||| |||||||| ||||| |||| |||||||||||| | |||||| Sbjct 22327 TC--AACCTAATAACAATGGTATTGAGGTAGATGATGCTTCACAACATGT-TATGTTATC 22271 Query 26992 GGGAATAAAA---CAGAAAAATGTTTTGGCGGTTTAGAGATTAAAGCGCATGAATCTACA 27048 | ||||| | | ||||| ||||| || |||||||| |||||||||||||| || | Sbjct 22270 G--AATAACATTACTGAAAACTGTTTCGGTGGTTTAGAAATTAAAGCGCATGAGACTGCC 22213 Query 27049 AGCGCAGCAAGTGATGTTGTTGTAAGTGACCATCTTGATATTAAAAGTATTCGTTCTTAT 27108 | || | | || || || | | | ||||| || | || || | | || Sbjct 22212 ACTGCTCCTAACAATATTCTTATCAACGGCCATCAATCAATACATTGTGTTAGAGCATAC 22153 Query 27109 AATATTCGTCATATAGGACATCATAGAGCCGGAGATGTACAATCTAAAACAGCTTATAAT 27168 ||| | ||||| ||||| |||| ||| ||| |||| | ||| |||| || Sbjct 22152 AATTGGAGACATATTGGACACCATAAAGCTACTGATCCACAAACGAAATCAGCACATTCA 22093 Query 27169 ATTATGTTG--AATAACTGTACTTCATTATATCCTCAATACAATGGTTCATATG-AGAAC 27225 ||| |||| ||| |||| || || | || | ||||||| ||| || | Sbjct 22092 ATT--GTTGCAAATGGTATTACTGCAATAGAGCCGGTAGACAATGGCAAGTATCCAGGAG 22035 Query 27226 ACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGTAGTTGTTAATAACTTTACA 27285 ||||||| ||||| ||| || | | ||| ||| |||| || ||||| ||||| Sbjct 22034 -CAACACCTAGAGCCATGATTGTGTCTGCATACCGAAACGTTCAAGTTAACGGTTTTACT 21976 Query 27286 GCTATTGGCGATGGCAACTTTATGGCAAATATGCCAGTTATTGCTGTTCAATTCAGAGCA 27345 || || || ||| | ||||||||| || | ||||| ||||||| |||| Sbjct 21975 GCAATAGGTAGTGGTGAGTTTATGGCAGGGCAACCGGCAATTGCAGTTCAATATCGAGCT 21916 Query 27346 GAAAACGTTATGCTTAACAATATTAATGTAAGTGGTTTCAAAAATTCATTAGCTGATGTT 27405 || || || ||| | |||||| | ||| | | ||||||| ||| || | ||| | Sbjct 21915 GAGAATGTAATGTTGAACAATTTAAATATCACTGGTTTCGTTAATGCAAGTGAAGATATA 21856 Query 27406 AAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATTATCTAATATCAATATTGTT 27465 ||| | | ||||| ||||||||||| || || | | || ||| | |||||| Sbjct 21855 AAAATTATGGGTGGTAATAATAGACCTAAGAACGTTACGATTTCAAATTTGAATATTTGG 21796 Query 27466 AATTCATCTAACAATAGAGGTATTGCAGGTGGTGGAAAAATTTATGATTTAAGAATTATA 27525 || |||||||| |||| | ||| | || ||| ||| ||||||| ||||||||| Sbjct 21795 AACTCATCTAAGAATATTGCTATCGGTGGCGGTTCTAAAGTTTATGACACTAGAATTATA 21736 Query 27526 AATGCTAACTTGCAAGGTAATGGTACAGGAAATGGTGTTGAATTA--TATAATAACACAG 27583 ||||||||||||||||||||||| || |||| ||||| | ||| |||| |||||| | Sbjct 21735 AATGCTAACTTGCAAGGTAATGGCACTGGAACAGGTGT--ATTTATGTATAGTAACACTG 21678 Query 27584 CTGAAATTGTTGGAGTAAGTGCT-GAGAATTATAAGAGACCAGCGATGATTGCTGGTAAA 27642 | ||| || |||| || ||| || | |||| | | || ||||| ||||| Sbjct 21677 CGGAACTTATTGGTGTTCAAGCTACAGGA-TATACTAATGCGGCAGACATTGCAGGTAAG 21619 Query 27643 GAATACTTTTATATGCCAACGAGTCTTAAAGGAGGGTTCAGTGGGGGGAGCACAGGTGGT 27702 |||| | | ||||| | | ||||| || ||||||| || |||||| Sbjct 21618 AAATATAATAAAGCTCCAACTGTTGTAAAAGGCGGATTCAGTGCAGGCTCTACAGGTTCA 21559 Query 27703 GCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTACTGGTGGTTCCTTTGCTCATAGT 27762 ||||| |||| ||| | ||| |||||||| || || ||| | | |||||| |||| Sbjct 21558 GCAGCAGTTGCAGAACGTTCTGCGGTTATTGCTTCCACAGGTAATACTTTTGCTTTTAGT 21499 Score = 116 bits (128), Expect = 2e-21 Identities = 183/261 (70%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 25837 ATGAAAGTATATTTCCCACCAGAGGACAGAGACGGAAATCAATGGATTTATGGACAATAT 25896 |||| ||||||||| ||| | | ||| ||| || || || ||| | || || ||| | Sbjct 23419 ATGACAGTATATTTTCCAACCGCTGACCAAGATGGTAAACAGTGGGTATACGGGCAACAC 23360 Query 25897 ACATGGATTGTAAATTAAGA-AAGGTGGTAAATGATTTTGAGATTATTTTTAGATTTCCC 25955 || ||||| | ||||| | || || |||| | || || ||| ||||||||| Sbjct 23359 ACTTGGATAACAGATTAAAATAAAAGGGGCAATGCATATGCTTTTGTTTACAGATTTCCC 23300 Query 25956 TGTTGAATTAGGGCAAGAATTTAGATATAAAACAGTAGAAAATTTTAAAAGAATTGTTAA 26015 | | ||| | || |||||||| ||||||||||| ||||||||||| |||||| | | || Sbjct 23299 TATCGAACTCGGACAAGAATTCAGATATAAAACTGTAGAAAATTTCAAAAGATTGATAAA 23240 Query 26016 TGCTCATGGGCGCTTAGTTGATGATTTAGAATACCATAGAAAAGAAGAGAAACACGCACA 26075 | ||| | ||| ||| || | | |||| || |||||| ||||||||||| Sbjct 23239 TTATCACGCAGTATTAAATGAAAGAATAAACAAACATAAAACAGAAGAAAAACACGCACA 23180 Query 26076 TGATGCTAAACAAATTGATTA 26096 |||| ||||| || ||||| Sbjct 23179 CCATGCAAAACAGATAGATTA 23159 Score = 102 bits (112), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 13/222 (6%) Strand=Plus/Minus Query 30327 TATGGAGAGTTTAGTTGGACTAATTAAGGAGGGTTATATAATGGATTTTAAACAAGtttt 30386 ||||| || ||| |||||| ||||||||| | || |||| ||| ||||| Sbjct 19022 TATGGTGAAATTACTTGGACAGATTAAGGAGC-TGATTAAATG------AAAGTAGTTTA 18970 Query 30387 tttATATGATGGAACACCATATTTAGCA---TTTCGTGGCTCCGATGGGGAATATGATTA 30443 ||||||||| || || || || | ||| || || ||||| |||||| |||| Sbjct 18969 TTTATATGACGGGACGCCTTACATTGCAATGTTAAATGAA---GATGGCGAATATAATTA 18913 Query 30444 TCCTAATGACGAGTGGACAGAAACTCCACCACCAGAAGGATTATATGAGCCTATATATTT 30503 || |||| | ||||| ||||| ||||| ||| ||| |||| | ||| | ||||| Sbjct 18912 CCCAGATGAAGGATGGACGGAAACACCACCGCCACCAGGTATATACCAACCTTTTTATTT 18853 Query 30504 TAATGGGAATGAGTGGAAAGGTGCAAGTAAAGAAGAATGGGA 30545 |||||| |||| |||| ||| ||| ||||||||||||||| Sbjct 18852 TAATGGTGATGAATGGATAGGCACAACTAAAGAAGAATGGGA 18811 Score = 91.5 bits (100), Expect = 9e-14 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 28989 GCAGTATTAAATGAATTTAAATTCAAAGTAAGGGATTCTCTTATTAACAGCATATCTGGT 29048 ||||||||||| ||||| |||| |||| ||| || | ||||||| ||| | Sbjct 20318 GCAGTATTAAACGAATTCCAATTTGAAGTTGCTGATGCTTTGATTAACAAAATAACCTCA 20259 Query 29049 GTAACTAAGATTGAATATATAAGAATGTTTGATAAGTTAAGAGATGAAATCCAAAAAAGA 29108 ||| |||||||||||||| | ||||| | | |||| | |||||| | || | | Sbjct 20258 ACAACCAAGATTGAATATATTCGCATGTTCAGTCAATTAAAA-ATGAAAATCGAACAGCA 20200 Query 29109 A-TTAGTGACATTGAAGAAGCTATAGCAAATGGCGAAGATTATGTTGCAGAAATGAAAAC 29167 | ||| || || ||||| || || || ||||| | ||| ||||| || ||||||||||| Sbjct 20199 AGTTAAAGATATAGAAGATGCGATTGCGAATGGTGCAGACTATGTGGCGGAAATGAAAAC 20140 Query 29168 AGTTTTA 29174 ||| ||| Sbjct 20139 AGTATTA 20133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295594364004082