Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq16 116 4e-21 seq126 105 7e-18 seq39 91.5 1e-13 >seq16 Length=31725842 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || || | ||| || | ||||| || || || ||||| ||||||||||| | Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 137245 ATTGT-GCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| | ||||| ||||| ||||||||| ||||||| | ||||||||| ||||| Sbjct 21647085 AAAGTACCTCCA-TCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGG 21647143 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || || || ||||| | ||| | ||||||| |||||| || Sbjct 21647144 AATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAAC 21647203 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | |||||||| || || ||||| Sbjct 21647204 CTCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq126 Length=6421402 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 137218 GATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGC 137276 || || ||||| ||||||||||| || || | || | | ||| ||||| |||||||| Sbjct 2409845 GACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCA-TGTTCCAGTTGCTTACCAGC 2409903 Query 137277 ATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAG 137336 | ||||||| | ||||||||| ||||| || ||||| || || || || ||||| Sbjct 2409904 AAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTAC 2409963 Query 137337 CTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTT 137396 | ||| | ||||||| |||||| | |||| || | ||||| || || | ||||| Sbjct 2409964 ATTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTT 2410023 Query 137397 TACGAATATTTGCAT 137411 |||||| || ||||| Sbjct 2410024 TACGAAAATCTGCAT 2410038 >seq39 Length=21454635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 137257 ||| || | ||||| || | || ||||| ||||||||||| || || | || | | Sbjct 17272291 CAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA-T 17272233 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| ||||| ||||||||| ||||||| | ||||||||| |||| || ||||| || | Sbjct 17272232 CTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTAT 17272173 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | || || ||||| | ||| ||||| |||||| || || | || | | Sbjct 17272172 CCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGG 17272113 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | | || ||||||||||| || ||||| Sbjct 17272112 TCTTCTCCATAAAGGTTTTTACGAAAATCTGCAT 17272079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488518174342800