Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_023722.1 Length=59231 Score E Sequences producing significant alignments: (Bits) Value seq372 149 2e-31 >seq372 Length=36520 Score = 149 bits (164), Expect = 2e-31 Identities = 226/320 (71%), Gaps = 5/320 (2%) Strand=Plus/Plus Query 32458 TTCGGTAGCCGCTGGGGCACGACCCACTGGGGGACCGACTTCGGCCGCGAAGGCGGATCC 32517 ||||| ||| ||||| |||||||||| || ||||||||||| || ||||| ||| Sbjct 5927 TTCGGGCCCCGGTGGGGAACGACCCACTACGGAACCGACTTCGGTAACGGCGGCGGTTCC 5986 Query 32518 GGAGGGAACCCCGTCTATGCCGTGAAGGACGGGACAATCGTCGCCGCCGGTCCCGCGTCG 32577 || || |||| ||||||||||| || ||||| || || | ||||| | ||||| Sbjct 5987 GGCGGTCACCCGGTCTATGCCGTAAAAGACGGCACGGTCCTATATGCCGGCGCGGCGTCT 6046 Query 32578 GGGTTCGGTCAGTGGGTCCTCGTCGACCACCCGACCGCCGTCGGTGGCGGGACCACGGTC 32637 || ||||| ||||||||| | |||||||| || | |||||| || || || |||| Sbjct 6047 GGTTTCGGCCAGTGGGTCGTGCTCGACCACGCGGCAAACGTCGGCGGTGGAACGTCGGTT 6106 Query 32638 TACGGGCACGTCATCCCCGAGGTGCGCGTCGGACAGGAGGTCCGCGCCGGCGACCGGATC 32697 | || || || ||||| |||||| ||||| ||| || || | || | || ||| Sbjct 6107 CATGGTCATGTTATCCCGGAGGTGGCTGTCGGCCAGTTCGTGCGTGAAGGGCAACGAATC 6166 Query 32698 GCGCGGGTCCACCC-GACGAAGTCGCCGGGGAACGGCAACGTCGATCCACACCTCCATCT 32756 |||||| | |||| ||| | | | |||||| || | ||| ||||| ||| | Sbjct 6167 GCGCGGATTAACCCGGACTCAAACAC----TAACGGCGGGGTGGCTCCCCACCTGCATTT 6222 Query 32757 GGAATGGCACCGGTACGTCT 32776 ||||||||||| |||| || Sbjct 6223 TGAATGGCACCGCTACGGCT 6242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189408087566514