Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq136 100 3e-16 seq181 87.8 2e-12 seq126 86.0 6e-12 >seq136 Length=5168023 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| |||||||| | ||||| ||| | ||| |||| || |||| ||||| ||| Sbjct 4857420 TCCAGCATCTGGGGGCCCACGTGCGACGGCCTGGATCGCATCGTGGAGCGCTGTGACCTG 4857479 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || |||||||||||| | | ||||| ||||||||||| |||| | | | | Sbjct 4857480 CCCGAGGTGCACGTGGGCGACTGGATGCTCTTTGAGAACATGGGCGCCTACACCGTTGCC 4857539 Query 21242 AGCTCTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 | || || || |||||||||| | |||| Sbjct 4857540 GCAGCCTCCACTTTCAACGGCTTCCAGAGGCCA 4857572 >seq181 Length=2762029 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 21005 TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCAT 21064 || ||||| || | |||||||| ||||||||| || |||||||| | | | |||| Sbjct 2722596 TTCATGTACTACATGAATGATGGGGTCTATGGCTCGTTCAACTGCATCCTGTATGACCAC 2722537 Query 21065 GCTCGTCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTC 21123 || | | ||| |||||| || ||| | |||| || || || |||| || Sbjct 2722536 GCACACGTGAAGCCATTGCTGCAGAAGAGACCCAAGCCT-GATGAGAAGTACTACTCATC 2722478 Query 21124 TAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCC 21183 ||||| ||| |||| | ||||||||| | || | ||| | ||| ||||| || || Sbjct 2722477 CAGCATCTGGCGGCCCACATGCGATGGCCTGGACTACATCATGGAGCACTGTGACCTACC 2722418 Query 21184 AGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGC 21228 ||| | || |||||||||||| | | ||||| ||||||| ||| Sbjct 2722417 CGAGGTGCATGTGGGCGACTGGATGCTCTTTGAGAACATGGTCGC 2722373 >seq126 Length=6421402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || || || |||||||| | ||||| ||| | ||| |||| | |||| ||||| ||| Sbjct 2972535 TCCAGTATCTGGGGGCCCATGTGCGACGGCCTGGATCGCATCGCGGAGCGCTGTGACCTG 2972476 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || ||| | || ||||| ||||| | | ||||| ||||||||||| |||| | | | Sbjct 2972475 CC-GAGATGCACCTGGGCAACTGGATGCTCTTTGAGAACATGGGCGCCTACACTATCGCC 2972417 Query 21242 AGCTCTTCAACCTTTAACGGCTTCCCAAAGCCAG 21275 | |||| || || |||||||||| | ||||| Sbjct 2972416 ACAGCTTCCACTTTCAACGGCTTCCAGAGGCCAG 2972383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463521095820720