Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024355.1 Length=93794 Score E Sequences producing significant alignments: (Bits) Value seq371 363 9e-96 >seq371 Length=40469 Score = 363 bits (402), Expect = 9e-96 Identities = 1251/1942 (64%), Gaps = 47/1942 (2%) Strand=Plus/Minus Query 31575 AGTATATTTCCCATCAGAAGACAGAGACGGAAATCAATGGGTTTATGGACAGTATACATG 31634 ||||||||| ||| | | ||| ||| || || || ||||| || || || | || || Sbjct 23414 AGTATATTTTCCAACCGCTGACCAAGATGGTAAACAGTGGGTATACGGGCAACACACTTG 23355 Query 31635 GATTGTAAATTAAGA-AAGGTGGTAAATGATTTTGAGATTGTTTTTAGATTTCCCTGTTG 31693 ||| | ||||| | || || |||| | || |||||| |||||||||| | | Sbjct 23354 GATAACAGATTAAAATAAAAGGGGCAATGCATATGCTTTTGTTTACAGATTTCCCTATCG 23295 Query 31694 AATTAGGGCAAGAGTTTAGATATAAAACAGTAGAAAATTTCAAAAGAATCGTTAATGCTC 31753 || | || ||||| || ||||||||||| |||||||||||||||||| | | ||| || Sbjct 23294 AACTCGGACAAGAATTCAGATATAAAACTGTAGAAAATTTCAAAAGATTGATAAATTATC 23235 Query 31754 ATGGGCGTTTAGTTGATGATTTAGAATACCATAGAAAAGAAGAAAAGCACGCACATGATG 31813 | | ||| ||| || | | |||| || ||||||||| |||||||| ||| Sbjct 23234 ACGCAGTATTAAATGAAAGAATAAACAAACATAAAACAGAAGAAAAACACGCACACCATG 23175 Query 31814 CTAAACAAATTGATTACACAACAAGTTATTCAAGAAGTGTTAGTGACGCATTAGATAAAC 31873 | ||||| || ||||| | || | | || ||| ||| | |||| | | | Sbjct 23174 CAAAACAGATAGATTATA-----AGCTCTCAAAC----GTTCATGATGAATTACAGTATC 23124 Query 31874 AGAACAATAGAATCAATAATCTAGTAGTCGGTGCAAATGGAGATGCTATGGCAGAGGTTA 31933 | | ||||| | |||| | ||| |||||| ||| | ||| ||| || | Sbjct 23123 AAGATGGACGAATCGAGGGCTTAGTTATTGGTCACAATGGAAATGGTGTGGAAGAAGTAA 23064 Query 31934 AAGATAGCCGAGTTGCATTAGACGGAAC-AATAAGTGAATTACTTTCACAAAGACTAGAT 31992 |||| || || || ||||| || | ||| | ||| |||||||| | | || | Sbjct 23063 AAGACAGTAGAACAGCTTTAGATGGTAGTAATCA-TGATTTACTTTCTGTACGTTTAAAA 23005 Query 31993 TATGATTTTGGTAAAT--TGAATaaaaaaaTTGATGATAATTTTAAGTATCTTAACGACA 32050 || || ||| |||| | ||||||| ||||| ||||| | || | || || || Sbjct 23004 TACGACTTTC--AAATCATTAATAAAACCATTGAAGATAACTACAATAAACTAAATAGCA 22947 Query 32051 AAATTGAACGTATTGTTAATGTTAACGATTATGGTGCTGACCCTACAGGTCAAAAAGATT 32110 | || ||| | ||| | ||||| || ||||||||||| ||||| || || |||| ||||| Sbjct 22946 AGATAGAAAGAATTATAAATGTGAATGATTATGGTGCAGACCCAACGGGGCAAACAGATT 22887 Query 32111 CAACATTAGCATTCCAAAAAGCATTTGGAGAAGGTCATAGACATGTTCATATGACAGAAG 32170 | || ||| || ||||||| | ||| || || |||| || ||||| | | Sbjct 22886 CTACGGAAGCGTTTAAAAAAGCGGTGCGAGGTGGAAATGTTCATGCACACATGACTGCGG 22827 Query 32171 GTACTTATATTATATCTGGTGTTAAAATGCCTAACTATACGATTTTAAGTGGGGAAGGTA 32230 | ||||| || || ||| ||||| |||| ||| |||| | ||| || ||||||| Sbjct 22826 GCACTTACATCATTAGTGGACTTAAATTGCCAAACAATACAGTATTATCCGGTGAAGGTA 22767 Query 32231 AAGGAATAACATATTTAAGGATTGCAGATGATGCGCCAGCTGAAACAATTGGTATAACTA 32290 | || || |||| | ||||||||| ||| |||||| |||| || ||||| || | Sbjct 22766 TTGATATCACTAATTTGAAAATTGCAGATACTGCACCAGCTCAAACGATAGGTATTACAA 22707 Query 32291 ACTTAAATATGGATGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA 32350 | ||||| || | Sbjct 22706 ATGAGGATATGACAGGTAACGCAACAAACATTTATATTGATAATTTCACAATTGATGGTA 22647 Query 32351 ATAGAACAAGACAAGGGAATACGTTATCTCCAGCTGGTGGTTCACGTTCAAGCAACATTA 32410 || || |||||| || ||| || || ||||||||| ||| ||| | Sbjct 22646 ATCGATACAGACAAAATAAAGTATTACAACCTGCGGGTGGTTCATTGTCATCTAACGTAC 22587 Query 32411 GATTTGCTGGTGTTAAGCATGGTTTTGCATATTCTGTAGAATCATTTAGCAGTTTATTAC 32470 | ||||| |||||||| ||| ||| ||| || ||||| || ||||||||| Sbjct 22586 GTTTTGCCGGTGTTAAATTCGGTGGTGCTTATAAAGTTAAATCAATTGATGGTTTATTAC 22527 Query 32471 ATGGTATTGATGTAACGTACGCTAGTGATGATTATTTCTATCAAGGAGACGGAATCAGAG 32530 |||| |||| | || || || |||||||| || | |||||||| || || | |||| Sbjct 22526 ATGGCTTTGACATCACTTATGCGAGTGATGAATACTATTATCAAGGTGATGGTGTAAGAG 22467 Query 32531 TAAAAGAAGCATTAGAAAGTAAATATATTCATATACAAGAATGTGAAACTTATGATTTCG 32590 | | ||||| | |||||||| ||| | || | ||| || | | || | Sbjct 22466 TTAGTGAAGCGCTTGAAAGTAAGTATGTAACGATTGATAGTTGTATTGCTAAAGGCTTTG 22407 Query 32591 GAGACGATGGTATTACTACTCATCATAGTAGATACTTAATTCTGCAAAATAACTATTCAC 32650 | || ||||| ||||| || |||||||||||||| |||| | || ||||||||| Sbjct 22406 GCGATGATGGAATTACAACACATCATAGTAGATATTTAACAATTAGTAACAACTATTCAG 22347 Query 32651 ACGACCCAGTAAAAGATAGTGGGAACC--ATAAC---GGGATTGAAGTGGACGATGGTTC 32705 ||||| ||| || | |||| ||||| || ||||| || || |||| ||| Sbjct 22346 CAGACCCTGTAGCAGCCTCTC--AACCTAATAACAATGGTATTGAGGTAGATGATGCTTC 22289 Query 32706 ACAACATGTGTTTGTAATGGGGAATAAAA---CAGAAAAATGTTTTGGTGGTTTAGAGAT 32762 ||||||||| | ||| || | ||||| | | ||||| ||||| ||||||||||| || Sbjct 22288 ACAACATGT-TATGTTATCG--AATAACATTACTGAAAACTGTTTCGGTGGTTTAGAAAT 22232 Query 32763 TAAAGCGCATGAACCTACAAGCGCAGCAAGTGATGTTGTTGTAAGTGACCATCTTGATAT 32822 |||||||||||| || | | || | | || || || | | | ||||| || Sbjct 22231 TAAAGCGCATGAGACTGCCACTGCTCCTAACAATATTCTTATCAACGGCCATCAATCAAT 22172 Query 32823 TAAAAGTATTCGTTCTTATAATATTCGTCATATAGGACATCATAGAGCCGGAGATGTACA 32882 | || || | | || ||| | ||||| ||||| |||| ||| ||| ||| Sbjct 22171 ACATTGTGTTAGAGCATACAATTGGAGACATATTGGACACCATAAAGCTACTGATCCACA 22112 Query 32883 ATCTAAAACAGCCTATAATATTATGTTG--AATAACTGTACTTCATTATATCCTCAATAT 32940 | | ||| |||| || ||| |||| ||| |||| || || | || | | Sbjct 22111 AACGAAATCAGCACATTCAATT--GTTGCAAATGGTATTACTGCAATAGAGCCGGTAGAC 22054 Query 32941 AATGGTTCATATG-AGAATACAACACCAAGAGCAATGGTTATTTGTGCTTACAGAAATGT 32999 ||||| ||| || | ||||||| ||||| ||| || | | ||| ||| |||| || Sbjct 22053 AATGGCAAGTATCCAGGAG-CAACACCTAGAGCCATGATTGTGTCTGCATACCGAAACGT 21995 Query 33000 GGTTGTTAATAACTTTACAGCTATTGGCGATGGCAATTTTATGGCAAATATGCCAGTTAT 33059 ||||| ||||| || || || ||| | ||||||||| || | || Sbjct 21994 TCAAGTTAACGGTTTTACTGCAATAGGTAGTGGTGAGTTTATGGCAGGGCAACCGGCAAT 21935 Query 33060 CGCTGTCCAATTCAGAGCAGAAAACGTTATGCTTAACAATATTAATGTAAGTGGTTTTAA 33119 || || |||| |||| || || || ||| | |||||| | ||| | | |||||| Sbjct 21934 TGCAGTTCAATATCGAGCTGAGAATGTAATGTTGAACAATTTAAATATCACTGGTTTCGT 21875 Query 33120 AAATTCATTAGCTGACGTTAAAGTATTTGGTGGAGCAAATAGACCTAAAAAAGTATCATT 33179 ||| || | || | ||| | | ||||| ||||||||||| || || | | Sbjct 21874 TAATGCAAGTGAAGATATAAAAATTATGGGTGGTAATAATAGACCTAAGAACGTTACGAT 21815 Query 33180 ATCTAATATCAATATTGTTAATTCATCTAACAATAGAGGTATTGCAGGCGGTGGAAAAAT 33239 || ||| | |||||| || |||||||| |||| | ||| | |||||| ||| | Sbjct 21814 TTCAAATTTGAATATTTGGAACTCATCTAAGAATATTGCTATCGGTGGCGGTTCTAAAGT 21755 Query 33240 TTATGATTTAAGAATTATAAATGCTAACTTGCAAGGTAATGGCACAGGAAATGGCGTTGA 33299 |||||| ||||||||||||||||||||||||||||||||||| |||| || || | Sbjct 21754 TTATGACACTAGAATTATAAATGCTAACTTGCAAGGTAATGGCACTGGAACAGGTGT--A 21697 Query 33300 ATTA--TATAATAACACAGCTGAAATTGTTGGAGTAAGTGCT-GAGAATTATAAAAGACC 33356 ||| |||| |||||| || ||| || |||| || ||| || | |||| | | Sbjct 21696 TTTATGTATAGTAACACTGCGGAACTTATTGGTGTTCAAGCTACAGGA-TATACTAATGC 21638 Query 33357 AGCAATGATTGCGGGTAAAGAATATTTCTATATGCCCACAAGTCTT---AAAGGAGGATT 33413 ||| ||||| ||||| ||||| ||| | ||| | || ||||| ||||| Sbjct 21637 GGCAGACATTGCAGGTAAGAAATAT---AATAAAGCTCCAACTGTTGTAAAAGGCGGATT 21581 Query 33414 CAGTGGGGGGAGCACAGGTGGTGCAGCTATTGCTGAAAGAAGTGCTGTTATTGCCTCTAC 33473 ||||| || |||||| ||||| |||| ||| | ||| |||||||| || || Sbjct 21580 CAGTGCAGGCTCTACAGGTTCAGCAGCAGTTGCAGAACGTTCTGCGGTTATTGCTTCCAC 21521 Query 33474 TGGTGGTTCCTTTGCTCATAGT 33495 ||| | | |||||| |||| Sbjct 21520 AGGTAATACTTTTGCTTTTAGT 21499 Score = 300 bits (332), Expect = 9e-77 Identities = 429/596 (72%), Gaps = 6/596 (1%) Strand=Plus/Minus Query 33689 CAAATACTAAACTTGATATTAGTACATTTACTGGTACAATCAAGACAGCAGGACAAGTTC 33748 |||||||| | | || ||| || || ||| ||||| | || || ||||||||| | Sbjct 21308 CAAATACTTCATTAGAGATTCGTCCAATTAGTGGTAACTTGAACACGAAAGGACAAGTAC 21249 Query 33749 AATCTGGACAAAACTTTGGGGACTATGCCGAGTATTTTGAATCACAAAGTGGTATGGCAA 33808 |||| || ||||| ||||| ||||| || ||||||| |||||| |||||||| | | Sbjct 21248 AATCCGGGCAAAATTTTGGTGACTACGCAGAGTATTATGAATCCCAAAGTGGCCAACCGA 21189 Query 33809 TTCCTACT-GGTAATATAGTTACACTTGATGGTAGATTTATAAGAAAAGCACAAGTCAAT 33867 ||| || | |||| || ||||| ||||||||| | | ||| |||||||| | | ||| Sbjct 21188 TTC-TATTAGGTACCATTGTTACGCTTGATGGTCGTTATATTCGAAAAGCAAACATAAAT 21130 Query 33868 GATATTCCAATCGGTGTTATATCTGAGACAGCAGGAGTTATTTTAGGGGACCAAATGTTC 33927 ||| || | ||| |||| || | || ||||| |||| |||| |||||||||| Sbjct 21129 GATGAACCTTTAGGTATTATTTCAGGCACTGCAGGTATTATACTAGGTGACCAAATGTGG 21070 Query 33928 CACCATAAAGACAAATATCTTAAAAA-TGAATTTGGCGGAGTTATTACTGAAAATGTCAA 33986 || || ||||| |||| ||||||||| ||||||||| | | |||||| ||| || Sbjct 21069 CATCACAAAGATAAAT-TCTTAAAAAATGAATTTGGTGTGACGCTCACTGAACTTGTTAA 21011 Query 33987 AAAAGAATGGCAAGATGATGCTGGTAATTGGTATTCAGATACAGTAGAAATGCCAGTTAA 34046 ||| ||||||||||||||| || |||||||||||||| ||| || | || | | Sbjct 21010 AAAGCAATGGCAAGATGATGAAGGCAATTGGTATTCAGAAGAAGTTGAGTTACCTATAGA 20951 Query 34047 AAATCCAGATTTTGACGAACGAGACGAAGAAGAATATCTGTCTCGTGCTGAACGACCAGA 34106 |||||| |||||||| | | || ||||||||| | || || ||||||| ||||| Sbjct 20950 AAATCCTGATTTTGATTCTAGCAAAGACGAAGAATATTTATCACGATCTGAACGCCCAGA 20891 Query 34107 ATGGAACGTTGTAGGTCTTATAGGTCAAGTATATATTAGAATAGATGGTACTGTCAAAGA 34166 |||||| || || || | || || ||| ||| | | || ||||||||||| | Sbjct 20890 ATGGAATGTGGTTGGATTAATGGGACAAATATTCACGCGTATTGATGGTACTGTATCTGT 20831 Query 34167 AAATGATTATAT-TAAGCCAGTAAACGGTGTCGGAACTAAAGATAATATTAATGGTTATT 34225 ||||| | || |||||| |||| ||| | ||||| |||||||||| ||||||| | Sbjct 20830 GAATGACAAAATCAAAGCCAATAAA-GGTATTGGAACGAAAGATAATAACAATGGTTTCT 20772 Query 34226 ATAGAGTTGAACAAATTACTACCCCATATGATAACGATAAAGGTTATGGTGTGGCA 34281 || | || | || ||||||| |||| |||| || |||||||| || || ||| Sbjct 20771 ATCGTGTGTTAGAAGTTACTACACCATTTGATTCTGAAAAAGGTTACGGCGTTGCA 20716 Score = 102 bits (112), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 13/222 (6%) Strand=Plus/Minus Query 36045 TATGGAGAGTTTAGTTGGACTAATTAAGGAGGGTTATATAATGGATTTTAAACAAGtttt 36104 ||||| || ||| |||||| ||||||||| | || |||| ||| ||||| Sbjct 19022 TATGGTGAAATTACTTGGACAGATTAAGGAGC-TGATTAAATG------AAAGTAGTTTA 18970 Query 36105 tttATATGATGGAACACCATATTTAGCA---TTTCGTGGCTCCGATGGGGAATATGATTA 36161 ||||||||| || || || || | ||| || || ||||| |||||| |||| Sbjct 18969 TTTATATGACGGGACGCCTTACATTGCAATGTTAAATGAA---GATGGCGAATATAATTA 18913 Query 36162 TCCTAATGACGAGTGGACAGAAACTCCACCACCAGAAGGATTATATGAGCCTATATATTT 36221 || |||| | ||||| ||||| ||||| ||| ||| |||| | ||| | ||||| Sbjct 18912 CCCAGATGAAGGATGGACGGAAACACCACCGCCACCAGGTATATACCAACCTTTTTATTT 18853 Query 36222 TAATGGGAATGAGTGGAAAGGTGCAAGTAAAGAAGAATGGGA 36263 |||||| |||| |||| ||| ||| ||||||||||||||| Sbjct 18852 TAATGGTGATGAATGGATAGGCACAACTAAAGAAGAATGGGA 18811 Score = 91.5 bits (100), Expect = 9e-14 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 34722 GCAGTATTAAATGAATTTAAATTCAAAGTAAGGGATTCTCTTATTAACAGCATATCTGGT 34781 ||||||||||| ||||| |||| |||| ||| || | ||||||| ||| | Sbjct 20318 GCAGTATTAAACGAATTCCAATTTGAAGTTGCTGATGCTTTGATTAACAAAATAACCTCA 20259 Query 34782 GTAACTAAGATTGAATATATAAGAATGTTTGATAAGTTAAGAGATGAAATCCAAAAAAGA 34841 ||| |||||||||||||| | ||||| | | |||| | |||||| | || | | Sbjct 20258 ACAACCAAGATTGAATATATTCGCATGTTCAGTCAATTAAAA-ATGAAAATCGAACAGCA 20200 Query 34842 A-TTAGTGACATTGAAGAAGCTATAGCAAATGGCGAAGATTATGTTGCAGAAATGAAAAC 34900 | ||| || || ||||| || || || ||||| | ||| ||||| || ||||||||||| Sbjct 20199 AGTTAAAGATATAGAAGATGCGATTGCGAATGGTGCAGACTATGTGGCGGAAATGAAAAC 20140 Query 34901 AGTTTTA 34907 ||| ||| Sbjct 20139 AGTATTA 20133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300000536894095