Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024387.1 Length=43767 Score E Sequences producing significant alignments: (Bits) Value seq371 104 7e-18 >seq371 Length=40469 Score = 104 bits (114), Expect = 7e-18 Identities = 223/333 (67%), Gaps = 3/333 (1%) Strand=Plus/Minus Query 12162 AAAGGTGCTTCGGCGTGGTCTAGTGTTATTAAGAAAGCGGCTCTAGCCATGAAAGTGGAT 12221 |||| |||||| ||| || ||| ||||| ||| ||| | |||||||| | Sbjct 27390 AAAGCTGCTTCTAAATGGGCTCGTGACATTAAACGAGCAGCTAAACAGATGAAAGTCAAC 27331 Query 12222 TTGTCCGGTAGTGAATTAAAAGGCATTATTGCACAAATTCATCGTGAATCTGGCGGGAAT 12281 || || |||||| |||||||| ||||||||||| ||||| ||||||||| || ||| Sbjct 27330 TTATCGAATAGTGAGTTAAAAGGTATTATTGCACAGATTCAACGTGAATCTAATGGTAAT 27271 Query 12282 GAAAAAATAACTCAGTCATCTGCTGTTGTGGATGTTAATACATTATCAGGCAACCCAGCT 12341 | ||||||| | | ||| ||| | |||| || ||| | ||||| Sbjct 27270 GCTGGTGTAACTCA---AGGAAATATTGGCGATATAAATAACTTGAGAGGTACTCCAGCA 27214 Query 12342 AAAGGTTTGCTTCAATATATACCGCAGACTTTTAACGCATACAGAATGAAAGGTCATAAT 12401 |||| || || |||||| |||| ||||| || |||| | ||||| ||||| Sbjct 27213 CAAGGATTACTACAATATGTACCAAGTACTTTCAAATCATATGCTGTTAAAGGGCATAAA 27154 Query 12402 AATATTTTTTCTGGTTATGATCAGTTGCTGGCGTTCTTCAATAACTCATCATGGAGAAAC 12461 |||||| ||||||||||| || || || ||||| || ||||| |||||| Sbjct 27153 AATATTAAAAACGGTTATGATCAATTACTTGCTTTCTTTAACAACTCTAACTGGAGACGT 27094 Query 12462 GACCTTCCCTACGGAAAACGAGGCTGGGGACCA 12494 || | || || || || | || ||||||||| Sbjct 27093 GATTTACCATATGGTAAGAGCGGTTGGGGACCA 27061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139925772662242