Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024391.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq371 194 5e-45 >seq371 Length=40469 Score = 194 bits (214), Expect = 5e-45 Identities = 458/685 (67%), Gaps = 9/685 (1%) Strand=Plus/Minus Query 6807 CCGTTCTGATTGGAATGATTAGATGCCAATAATTACTAGTTATATCACTCAAGTTGACGG 6866 ||||||| | || |||||| ||| | |||| | | || ||| ||| ||| || Sbjct 4114 CCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATGATGG 4057 Query 6867 TACAACAACTGTTGTCATCTCGGGTGTCG-AGTTAGGCAATAAAGAAACATTACTACTTG 6925 |||| ||||| ||||| |||||| | ||| || ||||| |||||||||| Sbjct 4056 CACAATAACTGCCGTCATTGAGGGTGTAACACTTACT-AACAAAGACTTTTTACTACTTG 3998 Query 6926 ATAACGGGTTTGATGTAGAAGTAGATGTAAACGTTATAGATCCGTTTCAAATTACCGGCA 6985 ||||||| || || || ||| ||||| || | || || | |||| || | | Sbjct 3997 ATAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAAATAACTGATA 3938 Query 6986 AGCAACGACGAAAAATATTTGCGCTTGTCAAAGATATAGAAGAACATATCGGTCAACCAA 7045 ||||||| ||||| |||| || ||||| || |||||||||| |||| || ||| Sbjct 3937 AGCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCACGCCAC 3878 Query 7046 TGGACTATATGAGACATATGTTCATCGAGTTTGTAAGAACGTACTACGGCTATGATGAAC 7105 || |||||||| || | ||| || | |||| | | |||||||| ||||| | Sbjct 3877 AAGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGATGAGC 3818 Query 7106 GTATTTCGCTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATTGAAGCAACGCTTG 7165 | || || || | ||||| | || | | ||||||||||| || || | | | ||| Sbjct 3817 GCATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGCAATTG 3758 Query 7166 ACTGGACGTTCTACAATGACATACCACTTAGCTACAAAACGAGTAATCTACTGAAACAAG 7225 | |||| ||| | || |||| || || || || ||||| ||| ||||| | || | | Sbjct 3757 AATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAAGAATG 3698 Query 7226 ATAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATATGCGGAAAGCCTC 7285 | | | | || |||||| | | ||| | || | || || || || || || ||| | Sbjct 3697 ACAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAG---C 3641 Query 7286 ACGCTGACCTAGCACATTATGAAGCAGTCGGTAGAGGTATGAACAGAAACAAGATGAATC 7345 | || || |||||||||||| ||||||| ||| | || |||||| |||||| | | Sbjct 3640 ATGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAAC 3581 Query 7346 ACTACGACAAACATGTATTAGCGTTATGTCGCGAACATCACAACCAGCAACATGCGATTG 7405 | | |||| | ||||||| ||||| | ||||| || ||||||| | || | Sbjct 3580 ATTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGG 3521 Query 7406 GCGTTAAGTCGTTT-GATGATAAATACCACTTGCATGACTCGTGGATAAAAGTTGATGAG 7464 || | | | |||| || | || || || || | | || ||| | | ||||| ||| Sbjct 3520 GCATGGA-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAG 3462 Query 7465 AGGCTCAATAAAATGCTGAAAGGAG 7489 || || || |||||||||||||||| Sbjct 3461 AGACTAAACAAAATGCTGAAAGGAG 3437 Score = 174 bits (192), Expect = 4e-39 Identities = 307/451 (68%), Gaps = 15/451 (3%) Strand=Plus/Minus Query 9490 ATATTTGATTATTTATAAGAGGTGGACGA--TGAGTAAATACAACGCTAAGAAAGTTGAG 9547 |||||||||| ||||| ||| ||| | ||||||||||||| || |||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAG-TGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAG 720 Query 9548 TATAAAGGTATTGTATTTGATAGCAAAGTAGAGTGTGAATATTACCAATATTTAGAA--- 9604 ||||||||||| || ||||||||||| || ||||| || ||| | || |||||| Sbjct 719 TATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAA 660 Query 9605 --AGTAA-TATGAATGGCACTAATTATGATCATATCGAAATACAACCGAAATNNNNNNNN 9661 | ||| ||| |||| |||||| ||||||| |||||||||| || Sbjct 659 CGATTAATTATAGATGG------TTATGACTATATCGAGATACAACCGAGATATGAGCTA 606 Query 9662 NNNNNNNNNNNNNGGAAACAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAG 9721 | |||||| | | | ||||| || || || | | ||||| Sbjct 605 ATACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAAT 546 Query 9722 GAAGGGAAACTGGTTGAAGTTGTAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATC 9781 | | || || ||||||| ||||||||||||| | |||||| ||| || || | Sbjct 545 AACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTA 486 Query 9782 AAAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCG 9841 || |||||| |||| ||||||| ||| |||| || | || |||||||||||||| Sbjct 485 AAGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCA 426 Query 9842 CCTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAATGAAAGTCAGACGTAAA 9901 ||||| ||||||||| |||| ||| | ||||| || || | || || ||||| || Sbjct 425 CCTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAA 366 Query 9902 AGAAAAAGAGAAATGAAGTGATTTAATGCAA 9932 | || | || | || |||||| ||| || Sbjct 365 CGCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134082866104094